BAC Information

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BAC

Clone NameMSMg01-149I15
Chromosome4 (Build37)
Map Location 132,566,806 - 132,567,148
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr
Downstream geneAhdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149I15.T7 (MSMg01no149_i15.b1)MSMg01-149I15.TJ (MSMg01no149_i15.g1)
ACCAG352231AG352232
length708698
length of high quality
(start - end)
366 (53 - 418)346 (76 - 421)
definitionCHROMAT_FILE: MSMg01no149_i15.b1 PHD_FILE: MSMg01no149_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:50 2005CHROMAT_FILE: MSMg01no149_i15.g1 PHD_FILE: MSMg01no149_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGAG
CCGCGGAATTCTTGCCTGTTCCCCGGGAGGCCCAGGTTCAATTCCTGGCC
AATGTACAGCTTTCTCAAGTTGTCAGAACAGAGGAATAAAGAACTAAAAT
TGCATGTGGGGCTGGAGAGATGGCTCAGTGGTTACGAGCACTGAGGTCTG
GAATCCAATTCCCAGCCACCACATGGTGGCTCACAATCATCTGTAATGGG
ATCTGATGCCATCTTCTGGTGTGTCTAAAGTCAGCGACAGTGTGCCCACA
TACAAGAGATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
CTTTTTTAAAAATTCCATGCGATTTATTCAGCCTGTTTGGGCAGCATGCC
TCAGAGGACTTGAGTGGAGGGCACCACAACAGCCTGAGGTGGTCAGTTCT
TTGTCTCCATCATGTGGGTCTCATATAACCCAGGCTTTCCCTGAAACTGG
GTCTATAACCTAAAGACGACCATGAGTCTCTGAACCTTCCGCTTCTGTCT
CCCAAGTGCAGGGGTTGAAGGTGGGCACCATCATGTCTAGTTCATGTGTT
GCTGGAGATTGAACCTAGGGCTCTCCTAGGCAAGGGCTCTGCTCCTTGGG
GTACATCCTTACCCTATTTCTTTTTTTGGATTTTTCGAGACAGAGTTTCC
TTGTGTGT
CCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCGCTCACAACAATTGTTCAAATTCA
GGAGAAGGCATGGTATCTACACTTTGTCCAGAATTTTTTGCGCCCTCGCC
GCCCGTGGACGACAATAAAAAGTAGGCGCTGGAAGAACTAAATCCAGGGC
TGAGTTTGAGGCGAAGGGCCACGAAATGCGGAGGAGACTGTGGCGTTTCC
AGAGCGGCTTTCTTGCCAAACGCCTCTTCTGATAGGAAAAACGTCCCCAA
ATTGAAAGTGTAGGTCCTCTCGTCTCTCCATGGGCCCTCTCAACGTGTTT
GGGACACCCCAGAAAGTCGCAGCCCTTTTGGCTCATCCTCTGATGCCCGA
TTCCACTCATTTTATTCTCACACCCCGCCCCTGCGCTACCACCCGCAACC
TTGGCGCAGCCAGAGCCCCGAGTAGGGGCCTCGGAACGCTCGGAATGTTC
CTAACCCTTGAGGAGGATCAGCAGTCCTAGATAAAACGGGATTCATCCGG
GCCGGGGATACTCCGGCATAGGGTCCACTCCGGGCCGCGCCGTCGTAACA
GCCGGAGTTGGTCCTGCCCGCACAGCGCGCGCAGTGGCCGAACGGCCACC
ACCCGTCCCGGCGCGCTCTGCGCGTGTTCTCCCCTGGGGTTCCGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_i15.g1 MSMg01no149_i15.g1 CHROMAT_FILE:
MSMg01no149_i15.g1 PHD_FILE: MSMg01no149_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:51 2005
         (346 letters)



>mm_chr4_132566606_132567349
          Length = 744

 Score =  638 bits (330), Expect = 0.0
 Identities = 341/346 (98%), Gaps = 4/346 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgctcacaa-caattgttcaaattcaggagaaggcatggtatctacactttgtccagaat 59
           ||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 201 cgctcacaaacaattgttcaaattcag---aaggcatggtatctacactttgtccagaat 257

                                                                       
Query: 60  tttttgcgccctcgccgcccgtggacgacaataaaaagtaggcgctggaagaactaaatc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttttgcgccctcgccgcccgtggacgacaataaaaagtaggcgctggaagaactaaatc 317

                                                                       
Query: 120 cagggctgagtttgaggcgaagggccacgaaatgcggaggagactgtggcgtttccagag 179
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 318 cagggctgagtttgaggcgaagggccacgaaatgcggaggagactgtagcgtttccagag 377

                                                                       
Query: 180 cggctttcttgccaaacgcctcttctgataggaaaaacgtccccaaattgaaagtgtagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cggctttcttgccaaacgcctcttctgataggaaaaacgtccccaaattgaaagtgtagg 437

                                                                       
Query: 240 tcctctcgtctctccatgggccctctcaacgtgtttgggacaccccagaaagtcgcagcc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcctctcgtctctccatgggccctctcaacgtgtttgggacaccccagaaagtcgcagcc 497

                                                         
Query: 300 cttttggctcatcctctgatgcccgattccactcattttattctca 345
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttttggctcatcctctgatgcccgattccactcattttattctca 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 744
Length adjustment: 9
Effective length of query: 337
Effective length of database: 735
Effective search space:   247695
Effective search space used:   247695
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)