BAC Information

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BAC

Clone NameMSMg01-149L15
Chromosome4 (Build37)
Map Location 19,950,615 - 19,951,130
singlet/doubletsinglet
Overlap geneTtpa
Upstream geneLOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282
Downstream geneLOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149L15.T7 (MSMg01no149_l15.b1)MSMg01-149L15.TJ (MSMg01no149_l15.g1)
ACCAG352368AG352369
length694692
length of high quality
(start - end)		647 (48 - 694)527 (75 - 601)
definitionCHROMAT_FILE: MSMg01no149_l15.b1 PHD_FILE: MSMg01no149_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:05 2005CHROMAT_FILE: MSMg01no149_l15.g1 PHD_FILE: MSMg01no149_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATGGTTTAGTGCCACGGAACATGGGAATATAGTAAAAATATCCTTAA
ATGGAAAGAGGTAAGATGTAATCACGAATATATTTTACTCACCCGGTCCT
TAATCTTTTCAGTCAGAAATGGTTTAATCATGGAGAAGACAGCATGGAAA
ATGACTGGCTCATTTATCAAATGGATCCCACGAACTTTCAGTGGAAAGGA
ATCCTTTCGAAAGGAAAGGATAATAAAAACCTTAATAACGCAACATAAAT
ACAGCAGTTACATTGCTAAAGGCAAGTCTCTTGTGGAACACATTATAAAG
TTCTGGTACGAGTCTGAAAGATGGCTCCATGGGCATCGTACTTGATGCAC
AAGCATGAAGACCTGAGTTCAGACCACAAGTAGCCATGCACAGCCATCAT
GTCTGTGTCTGTCCCCAGAGCAAAGGAACAAAGGAGCAGAGGCAGGCAGA
TCCCCACTCTACCCAGCCAAGTACGAATGGTGAGCTCTAGGTTCATTCAG
TTCAAGGCCCTGTTTCAAAATATAAGATGGAGAACCATAAAAGACACCAC
ACATTAACCTCTGTCCTCCAATGCATTTTGGTGAATATGCATGTGTGTGT
ATACACAGCAGAATCTAAAGTGACTTAATTTTCAAAATGATTTA

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAATGGGTTTTACTTTACTCTTATTT
ATACTTATATAAGGTGCTTAACAACATTTATAATAAGAAAGGGAGGAAGG
AAGGAAAGGGAAGGAAGAAAAAGGAAGGAAACTGCAAGAAAGACATCAAG
TCCCTTAAAGCAATGATGAGGCGAATTAAATACTTTTACTGAATTGGTGT
AATAAATAGAATGTGTTTGGGAAGGCTTAGGACGTGTGTTGCTAGGGGTG
TGCTTTGAGGTTTCAAAAGCCTATACCATCAGACCCACTTAGTTTTCACT
GCCTCCCTCTTGCGGATCAGATGCACACACTCAGCTGGGGCTCCAGAGCC
ATGCTTACCTGCCTGTTGCCTGCTTTGCCACCAACCATGCTGGTCATGGA
CTAACTTTCTGAAACTGCAATCACCAAATAAACTTTCTTCTATAAGTGTC
TGTGTCTGTGGTGTCTTATCACAGCAACAGAAAAGTAACTAAGCCATGGA
ATGACTATGGAACTGGAATTGTTTTGTTCAATAATCTTTAAGGAAATCGC
TCAATAATAAAATTATGTCGGGAAATATTGAAATGCGGGTTTCTAAAGCT
AATACCCAAGACCAAAAGACCAGGGAGATGCGAATTTGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_l15.b1 MSMg01no149_l15.b1 CHROMAT_FILE:
MSMg01no149_l15.b1 PHD_FILE: MSMg01no149_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:05 2005
         (647 letters)



>mm_chr4_19950615_19951659
          Length = 1045

 Score =  978 bits (506), Expect = 0.0
 Identities = 515/518 (99%), Gaps = 2/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aatggtttagtgccacggaacatgggaatatagtaaaaatatccttaaatggaaagaggt 65
           |||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 516 aatggtttagtg-caaggaacatgggaatatagtaaaaa-atccttaaatggaaagaggt 459

                                                                       
Query: 66  aagatgtaatcacgaatatattttactcacccggtccttaatcttttcagtcagaaatgg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aagatgtaatcacgaatatattttactcacccggtccttaatcttttcagtcagaaatgg 399

                                                                       
Query: 126 tttaatcatggagaagacagcatggaaaatgactggctcatttatcaaatggatcccacg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tttaatcatggagaagacagcatggaaaatgactggctcatttatcaaatggatcccacg 339

                                                                       
Query: 186 aactttcagtggaaaggaatcctttcgaaaggaaaggataataaaaaccttaataacgca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aactttcagtggaaaggaatcctttcgaaaggaaaggataataaaaaccttaataacgca 279

                                                                       
Query: 246 acataaatacagcagttacattgctaaaggcaagtctcttgtggaacacattataaagtt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 acataaatacagcagttacattgctaaaggcaagtctcttgtggaacacattataaagtt 219

                                                                       
Query: 306 ctggtacgagtctgaaagatggctccatgggcatcgtacttgatgcacaagcatgaagac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctggtacgagtctgaaagatggctccatgggcatcgtacttgatgcacaagcatgaagac 159

                                                                       
Query: 366 ctgagttcagaccacaagtagccatgcacagccatcatgtctgtgtctgtccccagagca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ctgagttcagaccacaagtagccatgcacagccatcatgtctgtgtctgtccccagagca 99

                                                                       
Query: 426 aaggaacaaaggagcagaggcaggcagatccccactctacccagccaagtacgaatggtg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  aaggaacaaaggagcagaggcaggcagatccccactctacccagccaagtacgaatggtg 39

                                                 
Query: 486 agctctaggttcattcagttcaaggccctgtttcaaaa 523
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  agctctaggttcattcagttcaaggccctgtttcaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1045
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1035
Effective search space:   659295
Effective search space used:   659295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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