Query= MSMg01no149_o21.b1 MSMg01no149_o21.b1 CHROMAT_FILE:
MSMg01no149_o21.b1 PHD_FILE: MSMg01no149_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:21 2005
(550 letters)
>mm_chr4_80851477_80852427
Length = 951
Score = 982 bits (508), Expect = 0.0
Identities = 538/548 (98%), Gaps = 3/548 (0%)
Strand = Plus / Plus
Query: 5 ggaattcagctctgtgtccctcttgtgtagccatctactttcttcagtaggttgcagttt 64
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 ggaattcagctctgtgcccctcttgtgtagccatctactttcttcagtgggttgcagttt 264
Query: 65 tcaggatttcatcttttcaaatgtcaacatttggagttttactctttgggaattgtgatc 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaggatttcatcttttcaaatatcaacatttggagttttactctttgggaattgtgatc 324
Query: 125 aacaggatttggatcttgggagattttatactttagggatttggctcttttaggatttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacaggatttggatcttgggagattttatactttagggatttggctcttttaggatttca 384
Query: 185 acattttagataatgacaagattatgtatctttcagggttctgactggcagtgggtgatc 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatttgagataatgacaagattatgtatctttcagggttctgactggcagtgggtgatc 444
Query: 245 tggcagaagtatgcttgttagtatcccacctttgatcttcttccttggtctctgcattgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggcagaagtatgcttgttagtatcccacctttgatcttcttccttggtctctgcattgc 504
Query: 305 tgctaaaagatggggggtggggtagggaatgaagcaccttaggcttgtatgccccaccca 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgctaaaagatggggg-tggggtagggaatgaagcaccttaggcttgtatgccccaccca 563
Query: 365 cggcaaactgagaacactgctatctgtgaataatctgcatttctaggtcacattaaaatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cggcaaactgagaacactgctatctgtgaataatctgcatttctaggtcacattaaaatc 623
Query: 425 tttttttattttcccattattcttcttgtaaaagtgaataaaataattttcctacatttc 484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 tttttttattttcccattattcttcttgtaaaagtgaataaaacaattttcctacatttc 683
Query: 485 ctctcttgaaaaacctggcgatgttccctt-c-atgaggtcctcattactcagcccttcc 542
||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||
Sbjct: 684 ctctcttgaaaaacctggcgatgttccctggcgatgaggtcctcactactcagcccttcc 743
Query: 543 taaagaag 550
||||||||
Sbjct: 744 taaagaag 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_o21.g1 MSMg01no149_o21.g1 CHROMAT_FILE:
MSMg01no149_o21.g1 PHD_FILE: MSMg01no149_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:21 2005
(531 letters)
>mm_chr4_81026056_81026986
Length = 931
Score = 1019 bits (527), Expect = 0.0
Identities = 530/531 (99%)
Strand = Plus / Minus
Query: 1 cctcacttaaagattctaggagatcatttcacactttctgtaagcaaccattttataagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cctcacttaaagattctaggagatcatttcacactttctgtaagcaaccattttataagg 672
Query: 61 atattttgaagcacatacgaaattttagtgttgtactgttcaactgcctataatattgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atattttgaagcacatacgaaattttagtgttgtactgttcaactgcctataatattgaa 612
Query: 121 gtctatctttgtcttacttagaagcctctttgtaaactgggccatcattctaatcatgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtctatctttgtcttacttagaagcctctttgtaaactgggccatcattctaatcatgat 552
Query: 181 ctttcattaactgttctctaaatagtttcttatgtggcagatggggattgggagccatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctttcattaactgttctctaaatagtttcttatgtggcagatggggattgggagccatga 492
Query: 241 tggcgggaatgtatgaggcttacgaacatccctgtgtcatttctttaatatgtgtaagct 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tggcgggaatggatgaggcttacgaacatccctgtgtcatttctttaatatgtgtaagct 432
Query: 301 atggactattaacagatctatgatgagtgactgtcattgtaaatacttgcttaaaacagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atggactattaacagatctatgatgagtgactgtcattgtaaatacttgcttaaaacagt 372
Query: 361 agcgatgttttgccatggcacattgtccatgattcatcagtgttctgtcccatatttgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agcgatgttttgccatggcacattgtccatgattcatcagtgttctgtcccatatttgtc 312
Query: 421 ctaaatttgacatgaaaagaagttggaaattttcaaaattcttgaacgttaaaatttata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctaaatttgacatgaaaagaagttggaaattttcaaaattcttgaacgttaaaatttata 252
Query: 481 tcaggaaaaataacagaataaaagttatatcagttggtttaaggtcagaag 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcaggaaaaataacagaataaaagttatatcagttggtttaaggtcagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
