BAC Information

Click to search

BAC

Clone NameMSMg01-150G05
Chromosome4 (Build37)
Map Location 17,990,540 - 18,111,706
singlet/doubletdoublet
Overlap geneMmp16
Upstream geneLOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150G05.T7 (MSMg01no150_g05.b1)MSMg01-150G05.TJ (MSMg01no150_g05.g1)
ACCAG352843AG352844
length708728
length of high quality
(start - end)
410 (42 - 451)383 (114 - 496)
definitionCHROMAT_FILE: MSMg01no150_g05.b1 PHD_FILE: MSMg01no150_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:56 2005CHROMAT_FILE: MSMg01no150_g05.g1 PHD_FILE: MSMg01no150_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,990,540 - 17,990,945)(18,111,324 - 18,111,706)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTACTTTCCTTCCACTATATGAGTCCAGAAGACCTAGCTCAGGTCATC
AGACTTATTAGCAAAAAACCCTTACCACTGCACCATCTAATCAGTCTAGG
TATGTTTCTTTTGTTGTATGGTCTGAGTTCAACTATATTTAAGAAGAGAC
AATATTTTTTTAGTGGTAATAGAACATAAAATGTCGAGATTTAAATTTTT
ATCATAAGAGTACAGCCCTCCTAAGAATTTAAGTTAGAATTTATTTTGTT
AAAAAAATAAAAAATAAAAAGATTAGTCCAAGTTTTTGCTGCATTTCTCT
CATGAGCACTCAATGACTAAACCCATATATTTTTTTTCTGTACTATTTGA
AACAACAACATACCGGAAAAACGGAAATGATCATCAATAGGGAATTTAGT
ATTAGACAATTCAATGGAATATAACATAAAATTAAGATTATATCGCATTA
CACATATGAGTAACATATCAATATTTTAAGTGCACTATTTCAGAACAAAA
TGTGGAGATTCACAGCACAGTTAACCCACATACATATGAAGGCCAGCCGC
GCACATGAATACCCGCCAGGCCCCCCCTAAACTCCCCAGGAATAAAAAGC
ACCCCGCTAGCAATATGAATGCTCACCCCCGTAGCTATGTGCTTATCCTC
CCGTGTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAGCAGTAGAGTCTCTCTGACT
AGTCGGCCTGGCCATATTGGAGAGTTATATGCCAAAGAGACAGTGTGTCT
CAAAATGAAGGGGTGCATGCTTAAAGAACAACTTCCAATGGTCTCTGTAC
CCCTGAAGTAGAATACACATGTTAAAGGAAGTCTTACTCATTTACTTGTA
AAAATATTTCTTCAGAGTCATAAGCCAACTCATCTGACACTGTCATCTAC
CCAGAGAGAAAACAGGCACACTAGATGTGATAAACTTTAGCTACTCTCAT
GAAATTGCAAAGGGTGTTGGAATAAAACACTAACAGATATTTTCAAGTAT
GAACTTTTAGATCATGTGAGAAAACTTTTAACCTCCCACTTACAAACAAA
TCCTTGAGATAAAATAGCTGGCTGACTGACCATGTTTTTTTTTTCTGTTT
TTTGTTTTTTGTACTTCAGCTGTCTATTCTAGCTTTGCAGACAGTATGTA
TAATGAATGACATGTTAAGTTGACATAGCCTGAGTTTCTCATACCAATTT
CCAGGTGCAAAGTCTTGTCTCATACACGCTTATTTGTCTACTAGAAATAA
AGCACTATGGTCATTTTCAGTTAAAATGTGCTCCTTTTCCCCCCACTGTT
AATTAAGCTTTCCTTACCAATCCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_g05.b1 MSMg01no150_g05.b1 CHROMAT_FILE:
MSMg01no150_g05.b1 PHD_FILE: MSMg01no150_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:56 2005
         (410 letters)



>mm_chr4_17990336_17991145
          Length = 810

 Score =  762 bits (394), Expect = 0.0
 Identities = 403/406 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtactttccttccactatatgagtccagaagacctagctcaggtcatcagact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtactttccttccactatatgagtccagaagacctagctcaggtcatcagact 264

                                                                       
Query: 65  tattagcaaaaaacccttaccactgcaccatctaatcagtctaggtatgtttcttttgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattagcaaaaaacccttaccactgcaccatctaatcagtctaggtatgtttcttttgtt 324

                                                                       
Query: 125 gtatggtctgagttcaactatatttaagaagagacaatatttttttagtggtaatagaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtatggtctgagttcaactatatttaagaagagacaatatttttttagtggtaatagaac 384

                                                                       
Query: 185 ataaaatgtcgagatttaaatttttatcataagagtacagccctcctaagaatttaagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaaatgtcgagatttaaatttttatcataagagtacagccctcctaagaatttaagtt 444

                                                                       
Query: 245 agaatttattttgttaaaaaaataaaaaataaaaagattagtccaagtttttgctgcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaatttattttgttaaaaaaataaaaaataaaaagattagtccaagtttttgctgcatt 504

                                                                       
Query: 305 tctctcatgagcactcaatgactaaacccatatattttttttctgtactatttgaaacaa 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 tctctcatgagcactcaatgactaaacccatatattttttttctgtactacttgaaacaa 564

                                                         
Query: 365 caacataccggaaaaacggaaatgatcatcaatagggaatttagta 410
           |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 565 caacatagtggaaaaacggaaatgatcatcaatagggaatttagta 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no150_g05.g1 MSMg01no150_g05.g1 CHROMAT_FILE:
MSMg01no150_g05.g1 PHD_FILE: MSMg01no150_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:56 2005
         (383 letters)



>mm_chr4_18111124_18111906
          Length = 783

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattggagagttatatgccaaagagacagtgtgtctcaaaatgaaggggtgcatgctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atattggagagttatatgccaaagagacagtgtgtctcaaaatgaaggggtgcatgctta 524

                                                                       
Query: 61  aagaacaacttccaatggtctctgtacccctgaagtagaatacacatgttaaaggaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aagaacaacttccaatggtctctgtacccctgaagtagaatacacatgttaaaggaagtc 464

                                                                       
Query: 121 ttactcatttacttgtaaaaatatttcttcagagtcataagccaactcatctgacactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttactcatttacttgtaaaaatatttcttcagagtcataagccaactcatctgacactgt 404

                                                                       
Query: 181 catctacccagagagaaaacaggcacactagatgtgataaactttagctactctcatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 catctacccagagagaaaacaggcacactagatgtgataaactttagctactctcatgaa 344

                                                                       
Query: 241 attgcaaagggtgttggaataaaacactaacagatattttcaagtatgaacttttagatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 attgcaaagggtgttggaataaaacactaacagatattttcaagtatgaacttttagatc 284

                                                                       
Query: 301 atgtgagaaaacttttaacctcccacttacaaacaaatccttgagataaaatagctggct 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 283 atgtgagaaaacttttaacctcccacttacaaagaaatccttgagataaaatagctggct 224

                                  
Query: 361 gactgaccatgttttttttttct 383
           ||||||||||| |||||||||||
Sbjct: 223 gactgaccatgatttttttttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)