BAC Information

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BAC

Clone NameMSMg01-150L01
Chromosome4 (Build37)
Map Location 36,544,154 - 36,544,403
singlet/doubletsinglet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150L01.T7 (MSMg01no150_l01.b1)MSMg01-150L01.TJ (MSMg01no150_l01.g1)
ACCAG353057AG353058
length737785
length of high quality
(start - end)
250 (73 - 322)201 (78 - 278)
definitionCHROMAT_FILE: MSMg01no150_l01.b1 PHD_FILE: MSMg01no150_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:19 2005CHROMAT_FILE: MSMg01no150_l01.g1 PHD_FILE: MSMg01no150_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCAGATATCCTGAATGAATACTATTTTAAAATCACAATTTTTATA
TTCATATCTCAGACTTATTTCTTTCCATTTTATACCTTTAACTGTAGGAG
ACACTTGTCAAGGTTTTAAAACTTGACTCCCAATGGCTAATATACTAAGT
TATAGCTTATGATCAAGATGAAGGTTTGTCTACAGAGTGTCTAAGAAAGG
ATTGCAGGATAGATCATGTACATAGTCTTTACAGACATATCTTGTGAAGT
CAAAACTTTATAGCAAACTCTGCCAACTAAGGTTAATCTCAGAAATTAGA
AAAAGAGAATTAATGTGCAGGTATTAATTGGAAATTATTTGTGAGTTAAA
GACAGGGATTTTGCCCATTTCCTTTATTAGTGTTATGACTACTGATCTGA
AGGGTAGAACATATAACCAACAGTACATGGCCATATAAAAATTAAAATCA
ATGCCAGTTTTGCATTCAATTTTTATGGCTTACCTTANCTTCTGTGTTGT
TTCATCCTACACGTGTATCTAGAGAACTGGATTTGACCTCTTTCCTTTGT
TCGTTTTTTCCGTATTCTCATTTGGTTTCATTTTATTATTACTAAATCAT
TAATTATCATTATCATTTATTAATAATCTTAAGAATGCTTGTTCCGATCC
CCACATGAAAATAGAATGAAACTCTCGCTTTCGTTTA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATT
TTTTTAATGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTT
ATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCC
TTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACCAG
AGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATG
GGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCAGTAAG
ATCGAGAATTGACTAATGGGACCTAATGAAACTCTAAAGTTTCTGCTAGG
TCTAAGAAACCGTCTTATACGACGACGAGATCTTCAACAGATTGTGTAGA
GACCTGATTTTTATTACATTTAGATCACTCTTTCTCCGGTTACGCTAAAG
AGATTGGCTAATTTTTTCTTCCCGATACTCCTTTTGCTGGTCCTAAATTT
GGTTCATTGACTTTTACCCGCCTCCTTTACCAAATCTTCCTCCTTTGACG
GTTGATTTATGGGGGTTTACAATCTTAAATCGCGTCCGGAATTACCGGGC
ATTTTGCCCGGTTTTCTTTATCAAGTTCACTCTCTTGCTTAATTTTTGTG
AACTTTCCCCGCTACTCCCCTATACAACCCCGCCCCCCGTCTCCATATGC
GCATTATTTCCCTTTCTACCCCCCGCGCTCCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_l01.b1 MSMg01no150_l01.b1 CHROMAT_FILE:
MSMg01no150_l01.b1 PHD_FILE: MSMg01no150_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:19 2005
         (250 letters)



>mm_chr4_36543954_36544603
          Length = 650

 Score =  422 bits (218), Expect = e-122
 Identities = 242/250 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactattttaaaatcacaatttttatattcatatctcagacttatttctttccatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atactattttaaaatcacaatttttatattcatatctcagacttatttctttccatttta 391

                                                                       
Query: 61  tacctttaactgtaggagacacttgtcaaggttttaaaacttgactcccaatggctaata 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 390 tacctttaactgtaggaaacacttgtcaaggttttaaaacttgactcccaatggcaaata 331

                                                                       
Query: 121 tactaagttatagcttatgatcaagatgaaggtttgtctacagagtgtctaagaaaggat 180
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 330 tactaagttgtagcttatgatcaagatgaaggtttatctacagagtgtctaagaaaggat 271

                                                                       
Query: 181 tgcaggatagatcatgtacatagtctttacagacatatcttgtgaagtcaaaactttata 240
           ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 270 tgcaggatagatcatgggcatagtctttacagtcatatcttgtgaagtcaaaactttatt 211

                     
Query: 241 gcaaactctg 250
           ||||||||||
Sbjct: 210 gcaaactctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)