BAC Information

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BAC

Clone NameMSMg01-150P21
Chromosome4 (Build37)
Map Location 54,100,104 - 54,100,223
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150P21.T7 (MSMg01no150_p21.b1)MSMg01-150P21.TJ (MSMg01no150_p21.g1)
ACCAG353280AG353281
length712707
length of high quality
(start - end)
122 (302 - 423)225 (80 - 304)
definitionCHROMAT_FILE: MSMg01no150_p21.b1 PHD_FILE: MSMg01no150_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:41 2005CHROMAT_FILE: MSMg01no150_p21.g1 PHD_FILE: MSMg01no150_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTTTCCTTCCCAGCTCCTCTAACCTGAAAATGTTTCCTCAC
ATTTTCAGTGAAAAACCCTGACTGGTACAGAGTTATCATAGGAAAAGATT
TCAGGTGACTACTCCATGCTGACTTGGCAAGCAACGATGAGTGAATGCAT
GAACATGGATGTGTGCATGTATGCGTGAACATTGACAATTAAGGATCATC
CATCTGTCCTAATCAGAAGAGAGGTGATGAGAATCCAAATAGCGAACAGG
AAAAGGCCAGTGCTGGGAGTGCCTTTGTAAAAGCTGCTTATGCTGTCACC
TGAGGGGAGCCTAGAATGAAGTGCCCAGTGGAGACTTCACTTTGTGTGGT
CTTCTCCATATGTGTCCAGGCGTACACCCGAGAAAGAAGGCAAGGGTGAT
CAGAGAAATAGGGTCTCAAAATGTTGGTGAGTGTCACAGAGACAAAAACG
CGGTCGGGTGACTTGACTCAAAGACTAAACGGGGGGGGGGGAAAATTTAG
TGGTTTTGCCTCTCTATAGTTCAGATGGGATGCTGTACACTAATGGGCAA
AATCTAATGCGTATGCCTAAGAGTTTCGTTGTGTAAAACACAAAGCATTG
CTTGAAAGAAAAAAAACCCTAAGGTGTGGAACTGATATCTCTGCTCCTCG
TCAATCTTATAG
AAAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAACACCTGAAAAAATGATCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGATGACAGCAGATGCTGACGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGATGGTGGGATTGCAGGCTTGTACAACCACTCT
GAAGATCAGACTGGCGGTTCCTCAGAAAACTGCATATAGTACTACCGGAG
GATCCAGCAATACCTCTCATGGGCATATATCCAGAAGATGCCCCAACTGG
CAAGAAGGACACATGCTCCACTATGTACATAGCAGCCTTAATTATAATAG
CCGGAAGCAGGGAGGAACCCAGATGCCACTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAGAAAGAA
TGAATTTGTGAAATTCCTAGACAAGTGAAAAAAGCTGGAGGGCATCATAA
AGAGAGAGGTAGCACATTCTGGGAAAANAATACACACTAAATACACAATG
GGGAGTGAATATTAGCCCAAAACCTAAGATACCCCACATATTGGACACAC
CTCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_p21.b1 MSMg01no150_p21.b1 CHROMAT_FILE:
MSMg01no150_p21.b1 PHD_FILE: MSMg01no150_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:41 2005
         (122 letters)



>mm_chr4_54099904_54100425
          Length = 522

 Score =  201 bits (104), Expect = 1e-56
 Identities = 116/120 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggccagtgctgggagtgcctttgtaaaagctgcttatgctgtcacctgaggggagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aaaggccagtgctgggagtgcctttgtaaaagctgcttatgctgtcacccgaggggagcc 260

                                                                       
Query: 61  tagaatgaagtgcccagtggagacttcactttgtgtggtcttctccatatgtgtccaggc 120
           |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct: 261 tagaatgaagtgcccagtggagacttcactttatatggtcttctccatatgtatccaggc 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)