BAC Information

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BAC

Clone NameMSMg01-151M04
Chromosome4 (Build37)
Map Location 119,057,486 - 119,057,789
singlet/doubletsinglet
Overlap gene1700041C02Rik
Upstream geneBC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, Ldha-ps2
Downstream geneLOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151M04.T7 (MSMg01no151_m04.b1)MSMg01-151M04.TJ (MSMg01no151_m04.g1)
ACCAG353831AG353832
length725738
length of high quality
(start - end)
305 (53 - 357)194 (74 - 267)
definitionCHROMAT_FILE: MSMg01no151_m04.b1 PHD_FILE: MSMg01no151_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:39 2005CHROMAT_FILE: MSMg01no151_m04.g1 PHD_FILE: MSMg01no151_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCAGGGAGAGGCTGCTACAGGGCACCCAGAAGTGAAGGC
TGCTGGGATTGGTGTAGAGGGGAAGCAGGAGCTTTGCCTCTGTGTAGCAC
TAAGGACCACAGCAACAGGGTTTTCGAGATGCGGGGCTCTGTTGTCAGGC
TGAGCCATGACACCATCCATGACTTTTACAGTTACGAATTTGTAGCCTGG
TTTCCTGAGTTAGGTGAACAATTCCTGCCTTTTTAGGATTTCTGTTAGGA
GTAATGGTAGCGCACAGCTATAATCCCAGCTTTCTGGAGATCCAGGCAGA
AGGCTAGAAAATCTGGGGCCAGTTTAGGCTACACCGGGAGACTCTGTCAC
AAACAAACAAGCAAACTTTCCCCCCCCTAATCGGACTAGACCAGAAAACT
CCATGATTCATGCCCATCGCCAATAGTCGCTACAACATTGCAAATTCCTC
CATATCAGCTTCCACCTGTATTAGACAGGCCTCTCCAGAGAGCCTCACGG
CGCCGTTCTCACCCTTTATCCTTCCCCCCTCTTTCCTCCTTCTTTCCCCC
TATCCCCTCTTTTTTCCCCCCCCCCCCTTTCCCCCCCCCCCCCTCCTTTT
CCCACCCCTTCCCCCCTCCCCCCCTCCCCTTTTTCCCCCTCCCCCTCCCC
CCCCTTCCCTCCCCCCCCCCCCCCC
CGATGAAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGTTCATATAGATCACTGCCTTACG
AGATGCCTTAGTTACTTTTATATTGTTGTGATAAAACATCATGACCAACG
CAACTTAGAGAAGGAGGAGTTTATTTGGGGCTTCTGGCTCCTGAGGGACC
GTCACAGCAGGGAAGCTTGGCAGCGAGCAGATGAAAAGTCACACCTGGAA
CTGCAGACAGGAAGCAGAACATACTCAAAATGAAACCTCAAGGCCCACCC
CAAGTGACACGCTTCCTCTGGTAAGGNTATGCCTCCAAAGCCTCCGTACA
CAGCCACCTTCCTGATCTAGCCCAATGTCAGTGGGCAACTGCCCCATGAG
AACCAGATGGGTTTGCCCCCCTGGGCTTCTATTCTGAGCCCCGGAATTTC
TGTGGTTTCTAAAGGCCTTGCGTTTTGGCAGCACCTGCTACCTCTCTTTG
AGACGGTGTTGTCCTGCCCCCGCACCGCCCCCTTTGAGATATAACGCTTT
GTTCCCTTCCTACATTCCCCACCTTTGACAACATCTTAACGGCGCCTCCT
GTGTGACTTTTGTCCTCCCCTTTCTTGCCCCCTTCCTCCTTTTCCCCTCC
CTCCCCCCCCTCTCTCACCCCCACCACCCTCCACCCCCCCCCCCCCCCCC
CTTCCTCTCCCCGCCCCACCCCCTCGTCCCCTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_m04.b1 MSMg01no151_m04.b1 CHROMAT_FILE:
MSMg01no151_m04.b1 PHD_FILE: MSMg01no151_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:39 2005
         (305 letters)



>mm_chr4_119057285_119057989
          Length = 705

 Score =  534 bits (276), Expect = e-156
 Identities = 297/304 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcttcagggagaggctgctacagggcacccagaagtgaaggctgctgggattggt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 202 ggaattcttcagggagaggctgctacagggcacccagaagtgaaggctgctgggactggt 261

                                                                       
Query: 62  gtagaggggaagcaggagctttgcctctgtgtagcactaaggaccacagcaacagggttt 121
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggagaggggaagcaggagctttgcctctgtgtagcactaaggaccacagcaacagggttt 321

                                                                       
Query: 122 tcgagatgcggggctctgttgtcaggctgagccatgacaccatccatgacttttacagtt 181
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcgagttgcggggctctgttgtcaggctgagccatgacaccatccatgacttttacagtt 381

                                                                       
Query: 182 acgaatttgtagcctggtttcctgagttaggtgaacaattcctgcctttttaggatttct 241
           ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||
Sbjct: 382 acgaatttgtagcctggtttcctgagccaggtgaacaattccagcctttttaggatttct 441

                                                                       
Query: 242 gttaggagtaatggtagcgcacagctataatcccagctttctggagatccaggcagaagg 301
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gttaggagtaatggtagtgcacagctataatcccagctttctggagatccaggcagaagg 501

               
Query: 302 ctag 305
           ||||
Sbjct: 502 ctag 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)