GCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTAATTCCACTCCTGTGCACCAAAAATTTGAGCAGTAGGA
GTGGCGTCATAGTTTATAGCTTTGATATTTGCTGTCATAGAAATTTATAA
AGCCAAACATGGTGGGAAGCTTATTCACCAAGGCATCACTGGTCAGTAGT
TTGGGGCAGTGGTGGCAGTTTCTGCTTTTTTTTTAATTAAAAATTTTTGA
GAGTATAATATAGTACACCATTTCTCCCTTCCCTTTCCTCCCTGCTGTTC
CCTCTCACATACAGTCTTCCTTGTTCTCTTTCATGTTCATGCTCATTAAA
TTCTCCTTAAGGATATTATTGTCTTTTCCCAAAAGATTCTATCATTACAG
TCTGTCTCAGGATAATACACCCTACTACAAGAAGACAGTTCCATGTACAC
ACATCTAATATATAACACATTATGAATGTGTGAGTAAGGAAGAAGTGTTT
GTAACACCTGATCAGCTTGACATTATTCTAGTTTGTGATTCAGGATGACC
TGGACAAGAGAGCTGTTTTTTTGAATTTAATTTAATTTAATTTAATTTAA
TTTAATTTAATTTAATTTAAATTAGGTATTTTCTTCATTTACATTTCCAA
TGCTACCCCAAAAGTCCTCCATATCCTCCCCCTACTGCCCTAGCCCCCAA
CCCCACTGCCCCCTTTTGACCTTGACG

CTTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCAAAGAATTCCTAAACC
TGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAA
TCAATGGCCTTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAA
GAAACAACACCCTTTACAATAGTCACAAATAATATGAAATACATTGGTGT
GACCCTAACCAAGGAAGTGAAAGATCTGTATCATAAGAACTTCAAGTCTC
TGAAGAAAGAAATAAAAGAAGATCTCAGAAGATAGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAGAAAAAATGGCTATCTTGCCAAAAGCAATCT
ACAGATTCAATGAAATCCCCATCAAAATTCCAACTCAATTCTTCACAGGC
TTATAAAGGGAAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGAT
AACAAAAACTATTCTCAATGTTAAAAGTGGGGATATGGGCACATGGGAAA
TATTCCTGAACAGAACAGCACTGGCTTTTGCTGTAAGATCAAGAATCAAC
AAATGGGACCTCCTAAAACTGCAAAGCTTCTGTAAGGCAAAAGACACTAT
CAATAAGACAAAAAGGCCACCAACAGGTTGGGAAAGGATCTTTACCAATC
CTAAATCAGATAGGAGAGTAATATACAATAT

Query= MSMg01no152_l04.b1 MSMg01no152_l04.b1 CHROMAT_FILE:
MSMg01no152_l04.b1 PHD_FILE: MSMg01no152_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:52 2005
         (671 letters)



>mm_chr4_24235760_24236830
          Length = 1071

 Score = 1075 bits (556), Expect = 0.0
 Identities = 627/660 (95%), Gaps = 20/660 (3%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctctaattccactcctgt--gcaccaaaaatttgagcagtaggagtggcgtcata 62
            ||||||||||||||||   ||||  ||||||| |||| ||||||||||||||||||||||
Sbjct: 1005 gaattctctaattcca---ctgtgcgcaccaagaattagagcagtaggagtggcgtcata 949

                                                                        
Query: 63   gtttatagctttgatatttgctgtcatagaaatttataaagccaaacatggtgggaagct 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  gtttatagctttgatatttgctgtcatagaaatttataaagccaaacatggtgggaagct 889

                                                                        
Query: 123  tattcaccaaggcatcactggtcagtagtttggggcagtggtggcagtttctgc-ttttt 181
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 888  tattcaccaaggcatcactggtcagtagtttggagcagtggtggcagtttctgctttttt 829

                                                                        
Query: 182  ttttaattaaaaatttttgagagtataatatagtacaccatttctcccttccctttcctc 241
            |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 828  ttttaattaaaattttttgagagtataatataatacaccatttctcccttccctttcctc 769

                                                                        
Query: 242  cctgctgttccctctcacatacagtcttccttgttctctttcatgttcatgctcattaaa 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 768  cctgctgttccctctcacatacagtcttccttgttctctttcatgttcatggtcattaaa 709

                                                                        
Query: 302  ttctccttaaggatattattgtcttttcccaaaagattctatcattacagtctgtctcag 361
            ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 708  ttctccttaaggatattgttgtcttttcccaaaagactctatcattacagtctgtctcag 649

                                                                        
Query: 362  gataatacaccctactacaagaagacagttccatgtacacacatctaatatataacacat 421
            ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 648  gataagacacactactacaggaagacagttccatgtacacacatctaatatataacacat 589

                                                                        
Query: 422  tatgaatgtgtgagtaaggaagaagtgtttgtaacacctgatcagcttgacattattcta 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588  tatgaatgtgtgagtaaggaagaagtgtttgtaacacctgatcagcttgacattattcta 529

                                                                        
Query: 482  gtttgtgattcaggatgacctggacaagagagctg--tttttttgaatttaatttaattt 539
            |||||||||||||||||||||||||||||||||||  |||||||           |||||
Sbjct: 528  gtttgtgattcaggatgacctggacaagagagctgggttttttt-----------aattt 480

                                                                        
Query: 540  aatttaatttaatttaatttaatttaatttaaattaggtattttcttcatttacatttcc 599
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 479  aatttaatttaatttaatttaatttaatttaaattaggtattttcttcacttacatttcc 420

                                                                        
Query: 600  aatgctaccccaaaagtcctccatatcctccccc-tactgccctagcccccaaccccact 658
            ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 419  aatgctaccccaaaattcctccatatcctcccccctactgccctagcccccaaccccact 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)