BAC Information

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BAC

Clone NameMSMg01-152L23
Chromosome4 (Build37)
Map Location 75,640,536 - 75,640,776
singlet/doubletsinglet
Overlap genePtprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152L23.T7 (MSMg01no152_l23.b1)MSMg01-152L23.TJ (MSMg01no152_l23.g1)
ACCAG354540AG354541
length790798
length of high quality
(start - end)
146 (66 - 211)241 (73 - 313)
definitionCHROMAT_FILE: MSMg01no152_l23.b1 PHD_FILE: MSMg01no152_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:56 2005CHROMAT_FILE: MSMg01no152_l23.g1 PHD_FILE: MSMg01no152_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGGAGAATCCGCGGAATTC
CAGATATCCGACTGACTCTGCCTCCCAAATGCTGTGTTGGAATTAAAGGT
ATGTGCCAAAGGGTATCAATCCCTTTTAAAGTAAAATTTTTTTAATTAAA
TAATGTGTTAGTTTGTAATCTGTTGCTTTGATAAAGGCCATGACCAAAGG
CAATTTGGAGAAGAAAGGGCTTATTTGACTTAGATGTCCTAAATACAGCC
TGTCACAGAGAAATGTCTGAGCTTTCTCGTACATCCCCCAACTACCTCAC
CAGTGGTATCATTTTCTATATGTGATGGGCCCTCCCACTACCAATCTTTA
ATCAATAAAATGTTTCCATATACTTGCCCTACAGCCCCATATGATGAAGG
TTATTTTTTTTTTAACCATGGTTTTCCTCCTCTCATACGACCTTTTGCCC
ATATCACCGCACCTTTTCCCCACCCTCACTCTATTCTTTTTTTCCCCCCT
TTTCATTACAATTTCTATATACCCCTCATTTCCCCCCTTGCTCTTTTACC
CCCACCTTTTTTCTTCTCCCTTTTTTCCCCTCCACCTTCTTTTATCCCTC
CCTTCATCCCCCTCTCCCTTTACCCTTTTACCCCCCCCTTTTTATCTCCC
CCCCCTTTTAATTCTCCCCCCTTTTTCTCCCCCCCCTACTCCCCTTTACA
ATATTTTCACGCTTCCCCCCATTTCCCCCTTTTTTCTTTTCCCCTTCTTT
TTTTTCTTCTTTCTCCCCCCTCTTTCTTCCCTCCATTTTT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAAGTGCAGCGGGCTCTGTGAGGTTGT
TCAAGCTTCACTGCTAACAACGGAGAAACCAATTCATTTCATTTGGCAAC
AAAATGTGGTATTCAGAAGCCAGCCTTGAAACAACAATGCTAAGAAAACA
ACCCTCTAACTAAACTATAGCTGAGGCTTTCAATTGCATTTCATCCTGAA
AGTGTTTTCTATGACAAAAGAAGAGCTTCACTGTTCCTTCTAATCCAACC
CAAGGAGCTGGGAGGTTGTTGGCAATGCGCTATCTTCTATGCACCTATTA
TGAAAGGCTAAAGATGGAGACCCAGGCCATGATATCTGAACTGTACAGCA
TATACACTCCATACTGCTATCCACACAACTCTTATTCTGACAGTGACATC
CCCATGCGTAATGGTACGCTCTTTCCCCCACCCTTTTCATTCCTGACCAA
CGCCTACAGTCCGCATGTATCTTCATTTATCCCGCATTATTCCGCCTTTA
CACATTTTCGGTTTTCCAATGATGTACCCTCCCACCGAAACGACCACTCC
TTTACCCCCCTGATTTTTGCCCTTACATTTCCCCCCTTTGCTGATTCACC
TAGCACCCCCTCTTTCTTTATTACCCCCTTTGCCTCTTCAAACCTTGTCT
ACTATTATGCCCTTTCTTAACCCCTCTTTCTCCTCCTTGCATTGTCCTCC
ATTTCGCCTTTCCATAATTTTTACCACCGCTTTCTCCATTCTTATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_l23.g1 MSMg01no152_l23.g1 CHROMAT_FILE:
MSMg01no152_l23.g1 PHD_FILE: MSMg01no152_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:56 2005
         (241 letters)



>mm_chr4_75640336_75640976
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagtgcagcgggctctgtgaggttgttcaagcttcactgctaacaacggagaaaccaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 agaagtgcagcgggctctgtgaggttgttcaagcttcactgctaacaatggagaaaccaa 260

                                                                       
Query: 61  ttcatttcatttggcaacaaaatgtggtattcagaagccagccttgaaacaacaatgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatttcatttggcaacaaaatgtggtattcagaagccagccttgaaacaacaatgcta 320

                                                                       
Query: 121 agaaaacaaccctctaactaaactatagctgaggctttcaattgcatttcatcctgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaacaaccctctaactaaactatagctgaggctttcaattgcatttcatcctgaaag 380

                                                                       
Query: 181 tgttttctatgacaaaagaagagcttcactgttccttctaatccaacccaaggagctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttctatgacaaaagaagagcttcactgttccttctaatccaacccaaggagctggg 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)