BAC Information

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BAC

Clone NameMSMg01-153K08
Chromosome4 (Build37)
Map Location 141,485,624 - 141,485,916
singlet/doubletsinglet
Overlap genenone
Upstream genePadi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1
Downstream geneTmem51, 9030409G11Rik, EG665983, LOC546484, 6330411D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153K08.T7 (MSMg01no153_k08.b1)MSMg01-153K08.TJ (MSMg01no153_k08.g1)
ACCAG355182AG355183
length708710
length of high quality
(start - end)
251 (66 - 316)293 (71 - 363)
definitionCHROMAT_FILE: MSMg01no153_k08.b1 PHD_FILE: MSMg01no153_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:04 2005CHROMAT_FILE: MSMg01no153_k08.g1 PHD_FILE: MSMg01no153_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTAAACGACTCCTATAGTCAGGACTCCGCGGAATTCCAGG
TGCGTTTCCTGAAAGACAATTTTGTTTTTTAAGCAAAACATTATTGTGTC
AGATAAAACAACAACAACCACAACAATAACAACAACAAAATTTAGTGCAT
CAGTAAGAAGAAATGCCAAATGAATTTGTCCCTATATTCAGCTGTTTTGT
TCAATTCCCACCACCCTCCCTTCCTCCCTCCCTCCATCTCTCTCATTCAT
GATTGTGCATGTTTATGCCTCAGCACACTCAGGTCAAGGATGACCCGCTG
CAGTTGGTCTTTGTCTTCCTCGTGGGTCTCAGAAATGGAACTCAGGGGTC
AGGGGTCATGTCTCACCCCCCCCGCTAGGCAGCAAGCACTTTCACCCACT
GAGCCATCTTGGCTCTTTCTTTGTCATCTGAAACAAAGTCTCACTCTAGC
TTAGGCTATCCACAGACTCATGTGTTCTTGAACACCTGACCCTTGCAGTG
CATATTTATGTGAAGGCTGGCGTAAAAGGAAGACCGTCTCGGCCTGAGGT
GGTTCACATACCTGGATCACATCAGCGTGCTTTGTTATGTGCTCTATGAC
AATGATCATGGTGGGTGTATAGATGGTTTTCCCAGATTTGCCTGTTCCTC
TCTTTTTTCTTTTTAATTCGACATACTCGATCCCATACCCTTCTTAATTC
TTTTATTC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCCGAAATATCTAGTGGTGACTGCTTCATTCATCTGCACCCCT
CCGTCCTCCCGAAACTTGCTTCACTAGTCAGAAGGTCGTCACCAATGAGT
CTTCTCCCTCAGGTCCTGGTCCCTCCCAGAGCCTCTGTACTCAGCCCGAG
TGTTTGCTGTGTTCAGGACCCTGACCTTCCTCTTAACAGGTGCCGCCACC
ATAGCCCTGAGCCCTCACCTCTTCTGGCTCCTGGTTTCCTGATCTATAAC
CCAAATAAAGAATGAAATGTTCTTCGGCAGCAGCTCCCCACAGGGGCGCC
ATGGGGATGAGGTCCTTCTGGGCCGCGACGCAGCTGCCCATCCTGTTACT
AAGTGGAAGCTGGTATTATTGACTGTGCCTTTCAGGCCTTGGAGAACAGT
GTGGCTCAAGAGAAAAGAAAAATGCGGGAAATGCTGGAGGCAGAAAGGAG
GAAGGCACAAGACCTGGAGAATCAGCTGACCCAGCAGAAGGAGGTAGGAG
CGCCCAGTGCCCCCTACCCCCAGCAGGACTTGCAGCCAGGTGTGCCCGGC
AGCCATGCAGTCTGAGGTCACGCCACTACCCACCGCCTCTGCTGGAAGTA
GCCAACACTTGCCTCTCATTGGTTGACCCCGGATGATCCCTGTGAGTTCA
GACCCCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_k08.g1 MSMg01no153_k08.g1 CHROMAT_FILE:
MSMg01no153_k08.g1 PHD_FILE: MSMg01no153_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:04 2005
         (293 letters)



>mm_chr4_141485424_141486116
          Length = 693

 Score =  528 bits (273), Expect = e-154
 Identities = 288/293 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtggtgactgcttcattcatctgcacccctccgtcctcccgaaacttgcttcactagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtggtgactgcttcattcatctgcacccctccgtcctcccgaaacttgcttcactagtca 434

                                                                       
Query: 61  gaaggtcgtcaccaatgagtcttctccctcaggtcctggtccctcccagagcctctgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaaggtcgtcaccaatgagtcttctccctcaggtcctggtccctcccagagcctctgtac 374

                                                                       
Query: 121 tcagcccgagtgtttgctgtgttcaggaccctgaccttcctcttaacaggtgccgccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 373 tcagcccgagtgtttgctgtgttcaggaccctgaccttcctcttaacaggtgccgccgcc 314

                                                                       
Query: 181 atagccctgagccctcacctcttctggctcctggtttcctgatctataacccaaataaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atagccctgagccctcacctcttctggctcctggtttcctgatctataacccaaataaag 254

                                                                
Query: 241 aatgaaatgttcttcggcagcagctccccacaggggcgccatggggatgaggt 293
           ||||||| |  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aatgaaagggccctcggcagcagctccccacaggggcgccatggggatgaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)