CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGACAATCTCTGTGAAGTAGGATTGGGATTTATTAAAAGACTGTGT
TGTGTGTATTTATGAAGGTGTTAATGAACTGACTTGTACTGAGGTCATGG
GAAGACTTTGGGAGTCCTGCTCTGTCAGTCTCTGTCTGCCTTATTCCTTT
GAGATATGGTCTGAACCTGGAGCTAGGCTTCCGGCCAGGAAGTCTTGTTC
TTCCTCTCTCATTGTTGACTCCACAACTGACTTTTTAGATGAGTGTTGGG
AGCTGAACTCAGGTCCTCATACTTGTTTACCAAGCTTTATTTCCAGCCCT
GGAAGACATCTTTATTTTGATAATTCCTTAACTTTTATTATAATTTATTT
TGTGCACATGGGCACACATGCAGTAGTATACATACATTCGGAGGACAGAT
TACAACGTTCAGGAAGAGTCAGTTTTGTCCTACATTGGATTCTGGGATTA
AACTCAGATAGTTAGGATTTGGTGGGAGGGTCCTTTACCCACTAAGCCAT
CTCCCTTTCCCCCTAAAAGTCTTTGTTTGAGACAGGGTTTATGTGGCTAT
GTTGATGAGCCTGGCCTACCAGGCCAGTACCTGTACCACCATGTTCAGAT
ACACTTTTCTTTTGTTTATACAGGAGCTCTTTGTGAAACTCTGGCTGCC

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGAGATCCACCTTCCCCATCTTGGTC
TAGTTATTCTTGTTGTGTTACAAACCACCCCCAAATTTGATGTTGTAAAG
CAGTTCTTTTATCATGCTTGCTGACTCCTCTAGCTAAGGAGTCTTTTTTT
TTTAAGATTTATTTTATGTATATGAGTACACTGTAGCTGTCTTCAGACAC
ACCAGAAGAAGGCATTGGATCCCATTATAGGTGGTTGTGAGCCACCATGT
GGTTGCTAGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCCT
AACCACCGAGCCATCTCTCCAGCCCCCTGGCTAGGGAATCTTGGTAGTAC
ACTACAGAGAGTTTGACACTGCTCCATGACATTTGGTATGACTTAAAGAC
ACAAAATTATTTCCTGGAAATGAGATAAAATTTTTCACATATATGTCTAG
GGGCTGGGATGATTCGGAGACGAGTGTCGCAGTGGCAAAGCAGAAGCTGC
ATTGCCTTTGTGCCCTGCCCGGAAACTCATGTAGTGTCCCTTCACAACAC
TCTAGTGTTGACAGCAGGGAGACACGACTGCACATTCTCAGGAAGGAATA
GGAAGGGGGGACATTGTAGGGGAGTGTGCAAGACAGGCAGTATTGTGTCT

Query= MSMg01no154_c19.b1 MSMg01no154_c19.b1 CHROMAT_FILE:
MSMg01no154_c19.b1 PHD_FILE: MSMg01no154_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:44 2005
         (547 letters)



>mm_chr4_108164298_108165239
          Length = 942

 Score =  963 bits (498), Expect = 0.0
 Identities = 529/544 (97%), Gaps = 9/544 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggacaatctctgtgaagtaggattgggatttattaaaagactgtgttgtgt 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggacaatcagtgtgaagtaggattgggatttattaaaagactgtgttgtgt 263

                                                                       
Query: 64  gtatttatgaaggtgttaatgaactgacttgtactgaggtcatgggaagactttgggagt 123
           ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||
Sbjct: 264 gtatttatgaaggtgttaatga-----cttgtactgaggtcatgggaagactttgggagt 318

                                                                       
Query: 124 cctgctctgtcagtctctgtctgccttattcctttgagatatggtctgaacctggagcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cctgctctgtcagtctctgtctgccttattcctttgagatatggtctgaacctggagcta 378

                                                                       
Query: 184 ggcttccggccaggaagtcttgttcttcctctctcattgttgactccacaactgactttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggcttccggccaggaagtcttgttcttcctctctcattgttgactccacaactgactttt 438

                                                                       
Query: 244 tagatgagtgttgggagctgaactcaggtcctcatacttgtttaccaagctttatttcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tagatgagtgttgggagctgaactcaggtcctcatacttgtttaccaagctttatttcca 498

                                                                       
Query: 304 gccctggaagacatctttattttgataattccttaacttttattataatttattttgtgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gccctggaagacatctttattttgataattccttaacttttattataatttattttgtgc 558

                                                                       
Query: 364 acatgggcacacatgcagtagtatacatacattcggaggacagattacaacgttcaggaa 423
           ||||||||||||||||||||||||||||    ||||||||||||  ||||| ||||||||
Sbjct: 559 acatgggcacacatgcagtagtatacat----tcggaggacagaggacaactttcaggaa 614

                                                                       
Query: 424 gagtcagttttgtcctacattggattctgggattaaactcagatagttaggatttggtgg 483
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaatcagttttgtcctacattggattctgggattaaactcagatagttaggatttggtgg 674

                                                                       
Query: 484 gagggtcctttacccactaagccatctccctttccccctaaaagtctttgtttgagacag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gagggtcctttacccactaagccatctccctttccccctaaaagtctttgtttgagacag 734

               
Query: 544 ggtt 547
           ||||
Sbjct: 735 ggtt 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 942
Length adjustment: 10
Effective length of query: 537
Effective length of database: 932
Effective search space:   500484
Effective search space used:   500484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)