Query= MSMg01no154_h15.b1 MSMg01no154_h15.b1 CHROMAT_FILE:
MSMg01no154_h15.b1 PHD_FILE: MSMg01no154_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:07 2005
(665 letters)
>mm_chr4_98143485_98144551
Length = 1067
Score = 1226 bits (634), Expect = 0.0
Identities = 655/662 (98%), Gaps = 2/662 (0%)
Strand = Plus / Plus
Query: 6 gaattccgagcattcggaa-atgagtttggaaagaa-tcttattggtctaatggggacaa 63
|||||||| ||||| |||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 206 gaattccgtgcatttggaatatgagtttggaaagaagtcttattggtctaatggggacaa 265
Query: 64 aagagaatagtcatgtgcagcaaatgctcgtcacctggactcaggtttcctgtgggatca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagagaatagtcatgtgcagcaaatgctcgtcacctggactcaggtttcctgtgggatca 325
Query: 124 ttttccctttaataaatatggtcatgtcagttaggcttcaccctagtaaactctaaggag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttttccctttaataaatatggtcatgtcagttaggcttcaccctagtaaactctaaggag 385
Query: 184 aggagcctgaagggatctgctggttgtattagctttgctaagtattgtagaagtagacaa 243
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 386 aggagcctgaagggatctgctggttgtattagctttgttaagtattgtagaagtagacaa 445
Query: 244 actgccagttagtgtttgttaaatgaactcagagagctaaaacattgttacaaggtgctc 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 actgccagttagtgtttgttaaatgaactcagagagctaaaacattggtacaaggtgctc 505
Query: 304 acattttctgtatagtaccttgtaattatgtgtgtggtgcattgttatatgtcccagtga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acattttctgtatagtaccttgtaattatgtgtgtggtgcattgttatatgtcccagtga 565
Query: 364 gttagtaggtctttcccggactcctacacgataaaccagaatgacaacttcagaaaggtt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gttagtaggtctttcccggactcctacacgataaaccagaatgacaacttcagaaaggtt 625
Query: 424 ttggatctaaagaaactcagtcttgagaggcagctcattacaagtctctcacaccgccaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttggatctaaagaaactcagtcttgagaggcagctcattacaagtctctcacaccgccaa 685
Query: 484 acatggctctttcagttctcactgcattctgctgtccatgtgaggaccagactactagat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 acatggctctttcagttctcactgcattctgctgtccatgtgaggaccagactactagat 745
Query: 544 ggaagtcatagcccttcctcaagagggcttcatgattgacacagtccagcatgcaggtat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ggaagtcatagcccttcctcaagagggcttcatgattgacacagtccagcatgcaggtat 805
Query: 604 tggcaatcgctctttataagacatgaactggtggttcagccgtgactgactgggaagtgg 663
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tggcaatcgctcttcataagacatgaactggtggttcagccgtgactgactgggaagtgg 865
Query: 664 tg 665
||
Sbjct: 866 tg 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1067
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1057
Effective search space: 692335
Effective search space used: 692335
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_h15.g1 MSMg01no154_h15.g1 CHROMAT_FILE:
MSMg01no154_h15.g1 PHD_FILE: MSMg01no154_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:07 2005
(627 letters)
>mm_chr4_98217156_98218183
Length = 1028
Score = 982 bits (508), Expect = 0.0
Identities = 572/628 (91%), Gaps = 54/628 (8%)
Strand = Plus / Minus
Query: 1 actctctttttac-atgctgggccccacatctgtggattatctgtgctaatctcacccac 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 actctctttttacaatgctgggccccacatctgtggattatctgtgctaatctcacccac 559
Query: 60 agtctgcaggtggtcacactttcttgttctccttacctggtatctgttcctgggctagcg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agtctgcaggtggtcacactttcttgttctccttacctggtatctgttcctgggctagcg 499
Query: 120 agctacttagcttcctccatgttttgactttgccttcatgaaacttcataaaacagaagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agctacttagcttcctccatgttttgactttgccttcatgaaacttcataaaacagaagt 439
Query: 180 gaaatgtcccactgcctatggagggtgatgggccaccctttgagaactattctgttcatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaaatgtcccactgcctatggagggtgatgggccaccctttgagaactattctgttcatt 379
Query: 240 gatagattctggaacttctgatttagaatttaaaaatgcataaaatgcatacagggagac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gatagattctggaacttctgatttagaatttaaaaatgcataaaatgcatacagggagac 319
Query: 300 taaagacaaattcaactcttactactgggaaaagcaaaacctagagagctaatctcagac 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 318 taaagacaaattcaactcttactactgggaaaagcaaaacctagagaactaatctcagac 259
Query: 360 taccactgcaagccacagacactttgctcacaagggaagtggtaattaaacttaagaaaa 419
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 taccgctgcaagccacagacactttgctcacaagggaagtggtaattaaacttaaga--- 202
Query: 420 cagattgcagattctcaggggcctgaagaacgaacgggaagggagttgccacaggttctg 479
||||||||||
Sbjct: 201 --------------------------------------------------acaggttctg 192
Query: 480 ttgctatgcaatccagattatctacctgctacaatgtcacttgttaaagaacaatcaaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttgctatgcaatccagattatctacctgctacaatgtcacttgttaaagaacaatcaaaa 132
Query: 540 caagggactaaataacttacaagttattaaacatacaacacagcacctgacactgaggaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 caagggactaaataacttacaagttattaaacatacaacacagcacctgacactgaggaa 72
Query: 600 ggaaagcaatgaacatgaaaaggagatt 627
||||||||||||||||||||||||||||
Sbjct: 71 ggaaagcaatgaacatgaaaaggagatt 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space: 628106
Effective search space used: 628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
