BAC Information

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BAC

Clone NameMSMg01-154L17
Chromosome4 (Build37)
Map Location 26,220,863 - 26,221,229
singlet/doubletsinglet
Overlap genenone
Upstream genePrdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
Downstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154L17.T7 (MSMg01no154_l17.b1)MSMg01-154L17.TJ (MSMg01no154_l17.g1)
ACCAG355944AG355945
length732723
length of high quality
(start - end)
---367 (176 - 542)
definitionCHROMAT_FILE: MSMg01no154_l17.b1 PHD_FILE: MSMg01no154_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:27 2005CHROMAT_FILE: MSMg01no154_l17.g1 PHD_FILE: MSMg01no154_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAACNGACCCGCGGAANNCGN
GGATTAACTCTACCCGCCGGGAGNNANNNGGNGAGGAGGAGAGGAAGAAA
NGAAGAGATTATCCCCGAAAAANGGANACAGAAAGAAAGAGAAGAAAGAG
AAANCAACACANAAGGGGAGAGAAAGAGNCCAAGCAGGCAACCACACGAC
ACCAAGGGAGGAANACACAACCGAGAACGGCCCACACCAAAATTTTTTTT
ATGCCCAAAGGAGATCCATGGCACCCCTAAATCAATTAAAAATCGGCGCT
GCAGCCAAGTTTCCTCCTTTCCCACACAACCGAACACGAGGCCCCCACTT
TTTTTTTCTCCCCCTCACCCACCCATTGAAAATGGAAAATTGATACGGAA
CCAAAGAATAACATTATTATAACCCCCAGCATTAATAGATAGAAATACAT
TAAAGAAAAATTCCACCACATAATTTTATTCTTTTACACCCCTTTTAATT
TTATATTTGACCCACTGTCCCCCGTACACAAACCAATCCAGACGAAAGTA
GAATCCACAAATTGCATGTTTCCACCCCCTACTGGCCGATTAGAACAATA
ATGTATTACCAAATGAATAGCACTACTACCCCACAAAGCAACCGAACTTT
TTTTTTTTTTTAACCCCCCTATATAAACACACAACATAGACAATACTTTT
TTTTTATATTATAAACACCATTCCTGGACTGG
TGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTACCCGCAAAATTCTGTGAGATGGTTAGATTTGTTAAGCTTGTATCTT
CAGTTTCAGTTTGGTGTACAACACTCTGGTAAATTGCCTCCACTTCCTTT
CTTCTAGAAATGAAGTCATGGTTCAGCCTGAAAATCAAGCCACATGTGAA
ACATTTCCCAGCCACTTTTGTCTGACATAGAAATCAAAATACAGGAGACA
AAAACACCAGGTGAAGAGTTGAAAATTTGACAGCGTATTTTGTACCATCA
AATTCTGCCCAGAATCTGCGTGTCTTTGGGAACTTCTATTTAACTACAAG
ACTTCTTTTGATGAAGCTAATAGGAGTTGGTTTTGTGCTCTGGAACTCAT
ACAATTATGATTAATAAAATTGACCATGGTGTTACAATTATCAAAATAGA
AAAGGAATATGTTTGAGGGAAGGGTCAATGTTCTCTAAAGCAATAAGAAC
CACTGGGCAACCCTACTTTGAAGTCTCTGGGAGGACATATGGACATATCT
AACTGACCGAGTTAAAGAAATCTCAGTGCTAAAGAATGTCTCAAGTATAC
ATACATACTGGAATAGGTGGTAACATTGCCTCCAGTGTTGTAACAGATAG
GAGTTAAGATCCTGTTCAAGTTAACCCCCCAAGAATCCCAGGCTCGTTTT
CTTTATCCATTATGTTTTCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_l17.g1 MSMg01no154_l17.g1 CHROMAT_FILE:
MSMg01no154_l17.g1 PHD_FILE: MSMg01no154_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:27 2005
         (367 letters)



>mm_chr4_26220663_26221429
          Length = 767

 Score =  687 bits (355), Expect = 0.0
 Identities = 364/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctgaaaatcaagccacatgtgaaacatttcccagccacttttgtctgacatagaaatc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcctgaaaatcaagccacacgtgaaacatttcccagccacttttgtctgacatagaaatc 508

                                                                       
Query: 61  aaaatacaggagacaaaaacaccaggtgaagagttgaaaatttgacagcgtattttgtac 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 507 aaaatacaggagacaaaaacaccaggtgaagagttgaaaatttgacagtgtattttgaac 448

                                                                       
Query: 121 catcaaattctgcccagaatctgcgtgtctttgggaacttctatttaactacaagacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catcaaattctgcccagaatctgcgtgtctttgggaacttctatttaactacaagacttc 388

                                                                       
Query: 181 ttttgatgaagctaataggagttggttttgtgctctggaactcatacaattatgattaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttttgatgaagctaataggagttggttttgtgctctggaactcatacaattatgattaat 328

                                                                       
Query: 241 aaaattgaccatggtgttacaattatcaaaatagaaaaggaatatgtttgagggaagggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaattgaccatggtgttacaattatcaaaatagaaaaggaatatgtttgagggaagggt 268

                                                                       
Query: 301 caatgttctctaaagcaataagaaccactgggcaaccctactttgaagtctctgggagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caatgttctctaaagcaataagaaccactgggcaaccctactttgaagtctctgggagga 208

                  
Query: 361 catatgg 367
           |||||||
Sbjct: 207 catatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)