BAC Information

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BAC

Clone NameMSMg01-155A06
Chromosome4 (Build37)
Map Location 86,727,104 - 86,727,493
singlet/doubletsinglet
Overlap geneSlc24a2
Upstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l
Downstream geneMllt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155A06.T7 (MSMg01no155_a06.b1)MSMg01-155A06.TJ (MSMg01no155_a06.g1)
ACCAG356150AG356151
length736717
length of high quality
(start - end)
405 (36 - 440)306 (74 - 379)
definitionCHROMAT_FILE: MSMg01no155_a06.b1 PHD_FILE: MSMg01no155_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:49 2005CHROMAT_FILE: MSMg01no155_a06.g1 PHD_FILE: MSMg01no155_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCG
GAATTCTACCCATAATTATCTTACAACTTCTGCTATTTGGGAGGCTCTGT
GGAGGAGCTGGGTACAGATGTACCCGATATAGCTTGTCAGTTCCGTGAGA
GGTATTTAAAGAAGTCCTATTTAAAGGGTGGTGCGGATGCCAGTGGAGTG
TACGAGATGACTACTTGGTAAGCAAGAAGAAAATATTACGATGGCTTCTA
TTTATTTATATCTTTCAAGAAAGAGAGCCAGCCAGATGGTTCATCAGGTA
AAGATGCTTACACCAACGTTGATGGCTTGACTTCAGTCCCAGTGTTGAAA
TTAAGAAATGGATTATCAGCCAGGTGTGGTGGCAGAGGCAGGTGGATTTC
TGAGTTTGAGGCCAGCCTGGTCTTCAAAGTGAGTTTCGGGACAGCCAGGG
CTATACCGAGAAATCCTGTCTCGAAAAACACAACTCACCTTAACAAATAG
GATAGAAACGGATTATCACACGTTGTCTTCATATCTTCATACTTGAGCTA
TGACATGTGCGTACATACACAATGATTATTACTTTTCAGTACAGAACTCA
GTCTGTGCTTGCTCCCTACCCGTTTGTACCAGGTGACCGACAATGAGCGT
CCCATACAAGTTATCGTTTCCCGATATCCTTTGACCCGTTTTTATTCCCC
CTTGCTGTTCCCCCCTCCCCTCTTTCTTCCCTCGTT
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCATAACGACACACTATTGGCTTATT
CAAACATTAACAGAAAGATTACAGAGCATCAGGGCTTTGTTTCTGTGGGC
TGGGGGCTTATCTTTGTTCACATAGCAACCAGTTGATGTATGACTTTACC
TGGCATCAAGGGGCAATAGACAGAGGGGAGGTTCCCGCCAGGTGTGCCGA
CCCAGACAAGATAGCCCTGCTTGTACAATCAAGCTGTTCTTAGGACTGTC
TTAACAACAGCCCTGTCTGTTCTGCTTTGTTCTCGGCCCCCGGCTGCCGG
GGGTTCAAGGACAACTTTTTTTACATGAATCACACGATACAAAATCTCAT
TTTCTTTCACCAGCAGCGCTGACAGAGGCTAACAGAATCACAGGAGGAAC
AAACTCCAGCCAGAGACAGCTCGAACATCTAACACCACAGACTACCAGAT
GGCGAAAGGTAAACGTAAGAATCTTACTAACAGACATCAAGACCACCCGG
CATCATCAGAACCTCGCATGCTCATCATAACCGATCCCTGTATTACTCTA
CCCCCCCCGAAAAGTTAGACTCGCATTTACCAGTATATTCCCTGATGATG
CCCCCCGCATTTTACGAATGGACTTTCCAAACCTCTTTTCCCCGAACTTA
TTGGCATAATCCCCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_a06.b1 MSMg01no155_a06.b1 CHROMAT_FILE:
MSMg01no155_a06.b1 PHD_FILE: MSMg01no155_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:49 2005
         (405 letters)



>mm_chr4_86726738_86727542
          Length = 805

 Score =  716 bits (370), Expect = 0.0
 Identities = 385/390 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctacccataattatcttacaacttctgctatttgggaggctctgtggaggagctg 75
           |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattctacccataaagatattacaacttctgctatttgggaggctctgtggaggagctg 697

                                                                       
Query: 76  ggtacagatgtacccgatatagcttgtcagttccgtgagaggtatttaaagaagtcctat 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ggtacagatgtacccgatatagcttgtcagttccgtgagaggtatttaaagaagtcctat 637

                                                                       
Query: 136 ttaaagggtggtgcggatgccagtggagtgtacgagatgactacttggtaagcaagaaga 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ttaaagggtggtgcggatgccagtggagtgtacgagatgactacttggtaagcaagaaga 577

                                                                       
Query: 196 aaatattacgatggcttctatttatttatatctttcaagaaagagagccagccagatggt 255
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aaatattaagatggcttctatttatttatatctttcaagaaagagagccagccagatggt 517

                                                                       
Query: 256 tcatcaggtaaagatgcttacaccaacgttgatggcttgacttcagtcccagtgttgaaa 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 516 tcatcaggtaaagatgcttacaccaacgttgatggcttgacttcagtcccagtgttgaag 457

                                                                       
Query: 316 ttaagaaatggattatcagccaggtgtggtggcagaggcaggtggatttctgagtttgag 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttaagaaatggattatcagccaggtgtggtggcagaggcaggtggatttctgagtttgag 397

                                         
Query: 376 gccagcctggtcttcaaagtgagtttcggg 405
           ||||||||||||||||||||||||||||||
Sbjct: 396 gccagcctggtcttcaaagtgagtttcggg 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)