Query= MSMg01no155_d18.b1 MSMg01no155_d18.b1 CHROMAT_FILE:
MSMg01no155_d18.b1 PHD_FILE: MSMg01no155_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:06 2005
(553 letters)
>mm_chr4_142590692_142591644
Length = 953
Score = 986 bits (510), Expect = 0.0
Identities = 540/550 (98%), Gaps = 2/550 (0%)
Strand = Plus / Plus
Query: 5 gaattcacacttctc-acacaacgtatgagagcaatgttatcataccagttggtgcttct 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacttc-caacacaacgtatgagagcaatgttatcataccagttggtgcttct 263
Query: 64 ggggaaaagcagcctggagtccattgcccagagtctgtcttcctagcttcctggtcaatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggggaaaagcagcctggagtccattgcccagagtctgtcttcctagcttcctggtcaatt 323
Query: 124 aattcaaggagaggccccaagacacataatttcttccagcgtttccagctttgaattgag 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattcaaggagatgccccaagacacataatttcttccagcgtttccagctttgaattgag 383
Query: 184 aagtgtaagaattccctcccctcccactccatctgtccctttgccttcagcctcacacag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagtgtaagaattccctcccctcccactccatctgtccctttgccttcagcctcacacag 443
Query: 244 tgctttaagtgaagatgataaggcccaaatatgaatgtgtggcctttgaaatggagacca 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 tgctttaagtgaagatgataaggcccaaatacgaatgtgtggcctttgaaatggagacca 503
Query: 304 aagggcattgttcttgcaagcaagggttgaaagttcaattggcatgctcagagtttagga 363
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 504 aagggcattgttcttgcaagcaagggttgaaagctcaattagcatgctcagagtttagga 563
Query: 364 ggaaggtggggtttcatgagatgagcgtcaccaaccagcacagccacctcactgccccac 423
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggagggtggggtttcatgagatgagcgtcaccaaccagcacagccacctcactgccccac 623
Query: 424 tgcttactagagcagtatctctccctgatcccatagtttgccagtttggctagtctagct 483
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 624 tgcttactagagcggtatctctccctgatcccagagtttgccagtttggctagtctagct 683
Query: 484 ggctggcttgatccagggatcctctgttcctgcctcttgatcagtgggattatggataac 543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggctggcttgaaccagggatcctctgttcctgcctcttgatcagtgggattatggataac 743
Query: 544 cactgtctac 553
||||||||||
Sbjct: 744 cactgtctac 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_d18.g1 MSMg01no155_d18.g1 CHROMAT_FILE:
MSMg01no155_d18.g1 PHD_FILE: MSMg01no155_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:06 2005
(513 letters)
>mm_chr4_142712724_142713635
Length = 912
Score = 930 bits (481), Expect = 0.0
Identities = 508/521 (97%), Gaps = 10/521 (1%)
Strand = Plus / Minus
Query: 1 tcagtacaggcaacccagagggagaggtgacagcacttggatcctgttccacactact-- 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tcagtacaggcaacccagagggagaggtgacagcacttggatcctgttccacactactgt 718
Query: 59 -----gaccccacaccccaaaagtctgatgaagctgctgtgctgagccacagttgtatta 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aaggggaccccacaccccaaaagtctgatgaagctgctgtgctgagccacagttgtatta 658
Query: 114 aaatcatttctatagctctaagcttgacacacacatcactgtctggagctcagttttgtt 173
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 657 aaatcatttctatagctctaagcttgacacatacatcactgtctggagctcggttttgtt 598
Query: 174 tcagtagagaggagttggagctggttccagctgaacgacttaagattcccttggttctgt 233
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 597 tcagtagagaggagttggagctggttccagctgaacgac-taagattcccttggttctgt 539
Query: 234 cagtaaggacaaggcctccacct-gtggtggcctcgagtgttaataaaggtgacacaggc 292
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 538 cagtaaggacaaggcctcca-ctcgtggtggcctcgagtgttaataaaggtgacacaggc 480
Query: 293 tcctgggaaggcctggtagcggctgtcaacacccacttggtgtcaagtaccaaagtaacg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcctgggaaggcctggtagcggctgtcaacacccacttggtgtcaagtaccaaagtaacg 420
Query: 353 taatcttgggtggtgtcgctgagtacctgccaggtgacattcaggaactgtctccatgtg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 taatcttgggtggtgtcgctgagtacctgccaggtgacattcaggaactgtctccatgtg 360
Query: 413 aagtggattggaagtgctttgagcagtctcgtggcgatggtcactgaaggactttcggag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 359 aagtggattggaagtgctttgagcagtctcgtggcgatggtcactgaaggacttttggag 300
Query: 473 ggaaggggctgctgaagaaacccctgctgctgcttgtctcc 513
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggaaggggctgctgaagaaacccctgctgctgcttgtctcc 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space: 453706
Effective search space used: 453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
