BAC Information

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BAC

Clone NameMSMg01-155E16
Chromosome4 (Build37)
Map Location 139,055,969 - 139,056,463
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1
Downstream geneC79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155E16.T7 (MSMg01no155_e16.b1)MSMg01-155E16.TJ (MSMg01no155_e16.g1)
ACCAG356338AG356339
length732726
length of high quality
(start - end)
170 (80 - 249)495 (78 - 572)
definitionCHROMAT_FILE: MSMg01no155_e16.b1 PHD_FILE: MSMg01no155_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:10 2005CHROMAT_FILE: MSMg01no155_e16.g1 PHD_FILE: MSMg01no155_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGC
GGAATTCCTGGTCTAGCACACAGACTCGGATCTGTAAAGTGGGAGAGGCC
CTGCCTGATTAAATGAGAATGGCCAAGCACATAGTGGTTCTCCAAATGGC
CTCTCATAAAAAAAAAAAAAAAAAAAAAAGCTGTTAACACTGGATGCCAT
CATGTCGAAGTGGACACACAGTGTCTAGGCCGTTCTTCAAGGGGCTCAAA
AGACTGCAGGACATGCCAGGTTAGGTGTGTTTCAGGCCATGCCGCTGACA
AGGGAAAGGAGCCCCTTCAGGTGCTTCTCCAGAACGAACGCAGAAGACTG
AGAGGACCTACCAATTATGCATGGCTTGATGCAACCACAGAGGGCTTGCA
GCAGGGAATGCCTGTGCACGCCTTCCACCTTCCCGTCAGTCAATCTAGTT
GGCTGGAAAGAGGTGTCTCCAGAATGTGTCAGGACTGGCAATTAGACTGG
GTTAGCCCCAATAGGGGAAAAAGTTGAGTGACTCAATACTGCTCAGTGTG
AAGGGAGACTTGATTCTCATTATAAAACTTGCGATGCTATGCCAACCTTG
GCTTTTGGTGTTAACTATACACTATTACACATGTTTCTAATAGTTACCCC
ACCCCCACAAATAAGCTTTCCGTTACCTATAACCGACATTAATTTCCCCT
TCCAAAGAACACAGTCTCATTTTACACCCCCT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGACATCTTGAGGCCCTTCCTC
CAAAACCCAGAGTCAAGGGAAGCCACGTTTTAGTAAAAAGGAAGCAGAGA
ATTGACCCTGGGCACAGGTTGGGCAGGGATCTAGGCAGGCAAGCCTTCCT
GGCCTGGAAGAACAAGTTTTAGCTCTTCTTCCCTCCAGGAAGCTGAGCCC
TGTGCACCACAGCACCTTTGCTCATGCTGTCTGCCGCCTGAACATCCCTG
CCTCGTGTTGTCTGCGCTCCTTCAGGCCATGTGGGGCTCAGAGCATGAGT
CATCCTGTCCAAGGGGCCTCTCCATACTGTTCTCTGTCCTGCCTAAAGTC
CCATCACACTCCAGAGCCACCACACTGCCTGTAGACAGCAATCCTGTCTC
TCCTTCCATGCCAGGGGCATGGCTGCCCCAGTTACCATCCTTCTAGCTGG
GGGCACCCACCCCTCTTTTGCTCAATATTTTTTATAGCTAACATTTATTC
GATGCGCGCATGTGCACGCTCAAGTGCGCCACGGCATATGCGTGGAGATC
AGAGAACGACTGCGCGAGCTGGTTCTCCCCTTCCACCATGCAGGTCCTAT
ACTCAGGTTATCCCACAGCATTTTGTACAGACCCACCTTTCCAGGGCTAG
GGACGATTCCTGACGCCAAGCCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_e16.g1 MSMg01no155_e16.g1 CHROMAT_FILE:
MSMg01no155_e16.g1 PHD_FILE: MSMg01no155_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:10 2005
         (495 letters)



>mm_chr4_139055769_139056663
          Length = 895

 Score =  934 bits (483), Expect = 0.0
 Identities = 492/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacatcttgaggcccttcctccaaaacccagagtcaagggaagccacgttttagtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgacatcttgaggcccttcctccaaaacccagagtcaagggaagccacgttttagtaaa 260

                                                                       
Query: 61  aaggaagcagagaattgaccctgggcacaggttgggcagggatctaggcaggcaagcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaagcagagaattgaccctgggcacaggttgggcagggatctaggcaggcaagcctt 320

                                                                       
Query: 121 cctggcctggaagaacaagttttagctcttcttccctccaggaagctgagccctgtgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggcctggaagaacaagttttagctcttcttccctccaggaagctgagccctgtgcac 380

                                                                       
Query: 181 cacagcacctttgctcatgctgtctgccgcctgaacatccctgcctcgtgttgtctgcgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagcacctttgctcatgctgtctgccgcctgaacatccctgcctcgtgttgtctgcgc 440

                                                                       
Query: 241 tccttcaggccatgtggggctcagagcatgagtcatcctgtccaaggggcctctccatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttcaggccatgtggggctcagagcatgagtcatcctgtccaaggggcctctccatac 500

                                                                       
Query: 301 tgttctctgtcctgcctaaagtcccatcacactccagagccaccacactgcctgtagaca 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 tgttctctgtcctgcctaaagtcccatcacactccagagtcaccacactgcctgtagaca 560

                                                                       
Query: 361 gcaatcctgtctctccttccatgccaggggcatggctgccccagttaccatccttctagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaatcctgtctctccttccatgccaggggcatggctgccccagttaccatccttctagc 620

                                                                       
Query: 421 tgggggcacccacccctcttttgctcaatattttttatagctaacatttattcgatgcgc 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tgggggcacccacccctcttttgttcaatattttttatagctaacatttattcgatgtgc 680

                          
Query: 481 gcatgtgcacgctca 495
           |||||||||||||||
Sbjct: 681 gcatgtgcacgctca 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)