BAC Information

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BAC

Clone NameMSMg01-155F01
Chromosome4 (Build37)
Map Location 97,168,679 - 97,169,274
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155F01.T7 (MSMg01no155_f01.b1)MSMg01-155F01.TJ (MSMg01no155_f01.g1)
ACCAG356356AG356357
length736737
length of high quality
(start - end)
597 (76 - 672)344 (187 - 530)
definitionCHROMAT_FILE: MSMg01no155_f01.b1 PHD_FILE: MSMg01no155_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:12 2005CHROMAT_FILE: MSMg01no155_f01.g1 PHD_FILE: MSMg01no155_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAACCCCGCAGCCGCCG
GAATCCCGAGTTTGTCCACCAATACAACTTGAAGCGTTTTAGGTCTCAAT
CCCTTGTATTGTAGTGCGGCATTTCTCATTTACTTGGAGTCATTCTTAGG
GCTCAATCAGTCATCCTAAAGAACATGCTTATTCAGGAGAGGTAGTCTCA
ATTAATATCTGACCTGTGGTAAAGAATAAGAAATGAGTTGTGACCTGTAA
AATGACACCCCCCACTTTTCTTCTTTAATTTTCTCTTTCAGTTATTCATT
TACATATTCAGTTACTGTTGTTTTTAGGCAACACAATGATGCACAGCCTG
ATCATTGAGAGCATACAGAGACCCAGACACAGACTCAGGAGCTGGCACTC
AGTTGTATGGAGCATCAACCACACAGACTTGCTACTGATGAATGATAGGC
ACAAATCTGTCACCAGTTGGCAGTTCAGGGGGCCAAGAAGGTGACATTTT
TATCCTTCTCTATTAACACTTAAGACTTCAAATTTGGTGAGACTATTGAG
GTAGATTTGGTGTGAAGATTTTAAGGAGTCAGAAACAGTGCGGAAGGTAC
AAATGGAAGTGGGTGTTTTCAGTTCAGCATTAGACTTGGGGTTGTGATGG
CCATGAAATACCTGAGGAAAATAATAGCCGATCTAAAGAAAATTATCACA
TAATTGTAAATATTACATTATTAAAGGCGACAGACG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTG
AGAAGCACCTGAAAAAATGTTCAACGTCCTTAATCATCAGGGAAATGCTA
ATCAAAACAACCCTGAGATTCCCCCTCACACCAGTCAGAATGGCTAAGAT
AAAAATTCAGGTGACAGAACATGCTGGCAAGGATGTGGAGAAAGGGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGAGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCT
GCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAA
GGACACATGCTCTACTATATTCATAGCAGCCTCATTTATAATAGCCAGAA
GCTGGAATGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAAT
GTGGTACATTTACATAATGGAGTACTACTCAGCTATTCAAAAGAATGAAT
GTATGAAATTCCTAGGCAAATGGATGGATCTGGAGGGCATCATCCTGAGT
GAGGTAACCCCATCACAAAGGAACTCACCCATATATACCTCCTGATAAGT
GGATATTAGCCCAGAAACTTACGACCCCCAAGATATAAGATACCATTTGC
TAAATGCCTGAAAGTCCAGAAGAATGAAGACCACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_f01.b1 MSMg01no155_f01.b1 CHROMAT_FILE:
MSMg01no155_f01.b1 PHD_FILE: MSMg01no155_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:12 2005
         (597 letters)



>mm_chr4_97168479_97169475
          Length = 997

 Score =  998 bits (516), Expect = 0.0
 Identities = 576/596 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttgaagcgttttaggtctcaatcccttgtattgtagtgcggcatttctcatttactt 60
           ||||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||
Sbjct: 796 aacttgaagcgttttagctctcaaccccttgtattgtagtgagccatttctcatttactt 737

                                                                       
Query: 61  ggagtcattcttagggctcaatcagtcatcctaaagaacatgcttattcaggagaggtag 120
           ||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 736 ggagtcattcttatggctgaatcagttatcccaaagaacatgcttattcaggagaggtag 677

                                                                       
Query: 121 tctcaattaatatctgacctgtggtaaagaataagaaatgagttgtgacctgtaaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tctcaattaatatctgacctgtggtaaagaataagaaatgagttgtgacctgtaaaatga 617

                                                                       
Query: 181 caccccccacttttcttctttaattttctctttcagttattcatttacatattcagttac 240
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catgccccacttttcttctttaattttctctttcagttattcatttacatattcagttac 557

                                                                       
Query: 241 tgttgtttttaggcaacacaatgatgcacagcctgatcattgagagcatacagagaccca 300
           || ||   ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 556 tgctgacattaggcaacacaatgatgcacagcctgatcattgagagcatacagagacccg 497

                                                                       
Query: 301 gacacagactcaggagctggcactcagttgtatggagcatcaaccacacagacttgctac 360
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |
Sbjct: 496 gacacagactcaggagctggcactcagttgtatggaacatcaaccacacagacttgccgc 437

                                                                       
Query: 361 tgatgaatgataggcacaaatctgtcaccagttggcagttcagggggccaagaaggtgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgatgaatgataggcacaaatctgtcaccagttggcagttcagggggccaagaaggtgac 377

                                                                       
Query: 421 atttttatccttctctattaacacttaagacttcaaatttggtgagactattgaggtaga 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 376 atttttatccttctctattaacacttaagactccaaatttggtgagactattgaggtaga 317

                                                                       
Query: 481 tttggtgtgaagattttaaggagtcagaaacagtgcggaaggtacaaatggaagtgggtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttggtgtgaagattttaaggagtcagaaacagtgcggaaggtacaaatggaagtgggtg 257

                                                                   
Query: 541 ttttcagttcagcattagacttggggttgtgatggccatgaaatacctgaggaaaa 596
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 256 ttttcagttcagcattagacttggggttgtgatggccatgaaatacctgatgaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)