BAC Information

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BAC

Clone NameMSMg01-155P01
Chromosome4 (Build37)
Map Location 76,924,910 - 76,925,522
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155P01.T7 (MSMg01no155_p01.b1)MSMg01-155P01.TJ (MSMg01no155_p01.g1)
ACCAG356808AG356809
length744742
length of high quality
(start - end)
616 (58 - 673)463 (77 - 539)
definitionCHROMAT_FILE: MSMg01no155_p01.b1 PHD_FILE: MSMg01no155_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:57 2005CHROMAT_FILE: MSMg01no155_p01.g1 PHD_FILE: MSMg01no155_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGTTGCAGACTTACTGCTGTGACATGAAAACCCATACGTTTCT
GATTCCATATGTAAAATTCTCAGGATATTTCCAATTGAATTTTTCAGTTC
CCTCCTTTTATAACTCACATTAATAAGACTAACAAACAAACAAAAAGTCT
TCAGAGAAGACTGAGTGCTTTAAGAACGCACTGAATACTGAATACCGCGA
ACACTGAGGTCAACTTGGAACGTAGGCAAATGGCCAGGTCTTCTATTGCA
AAGAATTTCCTCAGGAAGCTGGTTGACAAAGCATACCATATTTCCACTGC
TTATTATTCTACTTGTTTGAGTAATCAAAGAATGATCTGAAGTGCCAAAA
GAATGAAAGGATGCAGTATGATATGGTCAAATTACTTTCTTGAGTTCAAA
AGTTGAAGTCCGCTGCACAATGCAATACAAAACTGAATAAATGTCATCAT
TAGTTTAATAGGATGTTTTCTGGGGTGAGGTTCTTCAGTATTATCCACTT
GTCAAAAGCATAAGTACTTGGACATCAAAACTCCTCGGTAGGCATTTATA
TAAAATAAAACAGAATGAAACTTGAAGAGGAGGATTAAACGGGGGTGGGG
ATGAGAGAGAAGGTAAAGGAGGCACACAGCNNCCCNCCCCCCCCCCCCCC
NNCCCCCCCCCCCCCCCCCGCCCCCCTCNCCCCCCCCCCTCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCATCTGATTCAGAGCTACCAAG
AGCTGGCTCCCCGAGCCCATCCAGCGATGAGCACAGGCTCCTTTTCCTAG
AGACCTCCGCTAATTGATCTTTCTTCTTTTCCCTTTTTCCTCTTTTTCTT
CTAATCTCTCTCCAGGTATTCCTACCTAACCTTAACTTTTCCTCGGGTTC
AAGACCCTTGGAAAGGCCTGTATACTTATTTTGTGTACCATATTTCCTCT
TTGTTCCTACTCTCTCTCCCCACTTTACTTCTGATAGCTTGTCCTGAATT
TCCTCTAGAATTTTCAGCCCTATCTTAATCACTTGATAACATGTGAAAAG
GAACAAAAGGGCTCCTAACACCAGAAAAAATTCAAGGCCAAACATATTCC
ACTTTACTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGACCA
TACTTACCTCGTAAAGCTGTACTCACTGGTACTCTCGTTCCCCAGCTGAA
AAGTTCTGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGG
AACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTC
CTTGCACCGGTGATGGTAAACTCTCGTCCCCGAGTTTTTCTCGTCCCGGA
ATTCGGCACCAATTGTTATTAGACGCGGTCTCACCCCCGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_p01.b1 MSMg01no155_p01.b1 CHROMAT_FILE:
MSMg01no155_p01.b1 PHD_FILE: MSMg01no155_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:57 2005
         (616 letters)



>mm_chr4_76924710_76925725
          Length = 1016

 Score = 1147 bits (593), Expect = 0.0
 Identities = 608/613 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgcagacttactgctgtgacatgaaaacccatacgtttctgattccatatgtaaaat 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tgttgcagacttactgctgtgacatgaaaacccatacatttctgattccatatgtaaaat 260

                                                                       
Query: 61  tctcaggatatttccaattgaatttttcagttccctccttttataactcacattaataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcaggatatttccaattgaatttttcagttccctccttttataactcacattaataag 320

                                                                       
Query: 121 actaacaaacaaacaaaaagtcttcagagaagactgagtgctttaagaacgcactgaata 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 actaacaaacaaacaaaaagtcttcagagaagactgagtgctttaaaaacgcactgaata 380

                                                                       
Query: 181 ctgaataccgcgaacactgaggtcaacttggaacgtaggcaaatggccaggtcttctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaataccgcgaacactgaggtcaacttggaacgtaggcaaatggccaggtcttctatt 440

                                                                       
Query: 241 gcaaagaatttcctcaggaagctggttgacaaagcataccatatttccactgcttattat 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaagaatttcctcaggaagctggttgacaaagcataccatatttccactgcttattat 500

                                                                       
Query: 301 tctacttgtttgagtaatcaaagaatgatctgaagtgccaaaagaatgaaaggatgcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctacttgtttgagtaatcaaagaatgatctgaagtgccaaaagaatgaaaggatgcagt 560

                                                                       
Query: 361 atgatatggtcaaattactttcttgagttcaaaagttgaagtccgctgcacaatgcaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatatggtcaaattactttcttgagttcaaaagttgaagtccgctgcacaatgcaata 620

                                                                       
Query: 421 caaaactgaataaatgtcatcattagtttaataggatgttttctggggtgaggttcttca 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaactgaataaatgtcatcatttgtttaataggatgttttctggggtgaggttcttca 680

                                                                       
Query: 481 gtattatccacttgtcaaaagcataagtacttggacatcaaaactcctcggtaggcattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 gtattatccacttgtcaaaagcataagtacttggacatcaaaactcctctgtaggcattt 740

                                                                       
Query: 541 atataaaataaaacagaatgaaacttgaagaggaggattaaacgggggtggggatgagag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atataaaataaaacagaatgaaacttgaagaggaggattaaacgggggtggggatgagag 800

                        
Query: 601 agaaggtaaagga 613
           |||||||||||||
Sbjct: 801 agaaggtaaagga 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)