BAC Information

Click to search

BAC

Clone NameMSMg01-156M03
Chromosome4 (Build37)
Map Location 127,404,945 - 127,405,231
singlet/doubletsinglet
Overlap genenone
Upstream geneTcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156M03.T7 (MSMg01no156_m03.b1)MSMg01-156M03.TJ (MSMg01no156_m03.g1)
ACCAG357415AG357416
length755852
length of high quality
(start - end)
321 (45 - 365)286 (79 - 364)
definitionCHROMAT_FILE: MSMg01no156_m03.b1 PHD_FILE: MSMg01no156_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:58 2005CHROMAT_FILE: MSMg01no156_m03.g1 PHD_FILE: MSMg01no156_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTTCTGGGTTGGGACTATGGTTCATTCATGCCACACCAGCATCAA
GACTCAAGTTCAATTCCCAGAACCCAAACAAATTCAGGAGTGGTGGTGTG
TGTTGACAATCCCAGCACCAAGGAGGCGGGGACTTTGGGTCCATGAGGCA
GAACTGGTCAGGCTAATTGAATCCAAGCATTCCAGATATAAGTGAGAGAC
CTTGTTTCATAAAGAAAGATGGTCAGTTTCTGAGGGATGACATGCAAACT
GACCTCTGTTATCCACATGGGCATGCACACACATACATGCATGCCCATGC
ACCACATACATGTGTTTTTCACTCCTCCCCCCCCCAAGCATATATACACA
AAAATTAGATTTAATCATAAACACACACATATACAGCTTCTCATAGTCCT
TGTTTCTTTTCAAATGGGCTATGAAGGATTTTGTTGGTCAAGGCATTTTT
CGTGTTTCCTTAGGCTTTGAAGTCATTTGCAGGAGGCTGCTCCTTGTTTT
TAATTTTTATTTGTTACTTATTAACAAAAGTGATGGTGTCAACCTTTTCT
TGACATTGCTTGTGTTTCTCCATATGTTGATCAATTCCACTCATAACAGA
TTTCTTAATTTACCAGTTGTTTGTTCTGTTCAAAGTTAAAGGGGTTCCTA
ATTCAATTCATTTTTCTCACTTTTGGCCCCATTTTCAAGTTTTCTTAAAT
TTCCG
CGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAAATAGCTTTATAATTTT
CCTCTTATATATCCCACAGTGTTTTGACAGTTTTAGTCTTCATCTTGTAG
AGTATTAATGTACTGTGTATTTTTTTTTAACTTTTAAGTTAGAATACAAA
GTGGCATGTTTCTATATGGAACTTTCACACATTCTTAGCTTCTGTTGATC
TTCCTTATTCCTGTCCCTGTTCCTCACCTGCCTGCCCCTCTTCCCTATTT
GTATCCAACTGTCCCCATTTATGGTTTCATGTCATGTGTGGACTACCACA
CTCCTTACTCCTCTTTATTTCCTCTTTCCCACCCCCTTACGCCTTATACA
TGCACACACACACACACACACACCTCTTATAAAAAAAAACACACCTCTTA
TATCTCTCTCTGCATAGACTATGTATAGAGATTATTATTTAGATCTTAGA
GTATAGACTTTATAGCATTTAGTTAATAATAATTTTTACTACTTTATTAT
CCCATAGCTAACTCATATTATTTCTCTACATACAAAAACAATCAAAATTT
ATAGAGAGGAGNAGCCTCCCACCTAGTTAAGATCAGAGTTAGATTTTTTG
CTTTCTTCTATTTGTCGTTTCCGCCTCTTATTTTTTGTAGTTTTCTTCCT
TTTCTCTCCTTGTGAGTGCCTTTGTTACATACATGATAAACTGTTTTTCT
TACCCGCCGGCCCCCGAGCTTGTTTGTCCTTCTTTCTTTAAATTTCTCAC
ATTAATGCAATACTTTCTATCTTTTAATTCCCTTGATTTTTATTATCTAT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_m03.g1 MSMg01no156_m03.g1 CHROMAT_FILE:
MSMg01no156_m03.g1 PHD_FILE: MSMg01no156_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:58 2005
         (286 letters)



>mm_chr4_127404745_127405431
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaaatagctttataattttcctcttatatatcccacagtgttttgacagttttagtc 60
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 201 actaaaatagctttataattttcctcttatatatcccatagtgttttgatagttttagtc 260

                                                                       
Query: 61  ttcatcttgtagagtattaatgtactgtgtattttttttt-aacttttaagttagaatac 119
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ttcatcttgtagagtactaatgtactgtgtattttttttttaacttttaagttagaatac 320

                                                                       
Query: 120 aaagtggcatgtttctatatggaactttcacacattcttagcttctgttgatcttcctta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtggcatgtttctatatggaactttcacacattcttagcttctgttgatcttcctta 380

                                                                       
Query: 180 ttcctgtccctgttcctcacctgcctgcccctcttccctatttgtatccaactgtcccca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctgtccctgttcctcacctgcctgcccctcttccctatttgtatccaactgtcccca 440

                                                          
Query: 240 tttatggtttcatgtcatgtgtggactaccacactccttactcctct 286
           |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tttatggtttcatgtcatgtgtggtctaccacactccttactcctct 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space:   187806
Effective search space used:   187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)