BAC Information

Click to search

BAC

Clone NameMSMg01-156M07
Chromosome4 (Build37)
Map Location 20,068,195 - 20,068,480
singlet/doubletsinglet
Overlap genenone
Upstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream geneE130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156M07.T7 (MSMg01no156_m07.b1)MSMg01-156M07.TJ (MSMg01no156_m07.g1)
ACCAG357423AG357424
length698934
length of high quality
(start - end)
287 (10 - 296)102 (129 - 230)
definitionCHROMAT_FILE: MSMg01no156_m07.b1 PHD_FILE: MSMg01no156_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:59 2005CHROMAT_FILE: MSMg01no156_m07.g1 PHD_FILE: MSMg01no156_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGGCTCATTCATCTATCCTTCAACCATAGTTCCTGAAATGCCTATCTTG
AGCTGAACAGTGATAGTTTGCATATTGTGTATCTTACTGTGTGTGTACAT
ACCTCGTACTCATGTCCCTGAGAGTCTAGTGCCCCTGTATGCCTACATAC
CTATTAATAAACCACGGTTACACACCAAACCTCAGTGGTTTTCAAACTTC
CTAATGGTCTGATGCTTTAATGCAGTTCCTTCATGTTGTGGTGACGCCCA
AACCTAAAATTATTTTCATTGCTACTTTATAACTGTAATTTTGCTACTTG
TTTATGACTCCCCACCCGCCCCCACATTGTGTAAGTATTTGTGTTTTCTG
ATGGTCCTACCCGACCCCTATGAAATGGTCATTTGCTCCTCCTACTGGAT
TGTAATCCATAGTTCGAAACCTGATGATTTTATAGTATTAATTTCTCTTG
ATAATTTCATTTCACATAACAATTATAGTATTGATTATTTAATTATTGTA
TCGTCATAATTTATTTTTTATTTTCTTTTAACTATGCTTATACTAATTTT
CATGTTCTCTTAAATTTTGCCTTCACATTCCTCCTTTTGTGTTACACATA
TTGTTATATTTCCATATATCTTGTTTCCAGCACTTGCATCGATTTCTTTA
CTATTTTCTTTTAATTCTCTTACCTCTCGAAAAATTCGATTTACTTTN
TTTAATATTATGGTAAATATAAATAAATNTTTNCNCCCTTATATTATNTT
TACTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTAT
CATGAATGGGTGTTGGATCTTGTCACACGCTTTTTCTGCATCCAACGAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTG
ATGGATTTTCGTATATTAAACCTTCCCTGCATTCCTGGAATAAAACCTAC
TTGTTCTGGATGCATGATTGCTTTAAAGTGTTTCTTGAATTCTATTATTG
AGAATCTTATTGAACAATCTTGTATTTTTATTCCTATTTAGATACTAGTC
CGCATTTTCACAATTTTTTTTTGAAACCCCCCGTCGCCTATTTTTCTTCT
TATATATAATCTTTCCATTATAAATCCCCCCCCCTCCCTATAATATTATA
TATATTCTATTCATTCTGTACATCTTCATTATTTTATATCTTCTTCATCA
TACAAAGCTCTCTTTATTAATTATTCATCCCATTCTATATTATTCTTTTT
TTTTTCTTCTCACCCTACCACATAACCATTTTCTTTTTTACTTTCTATCA
TTATTCTCTCTCTATTATCTAATTTCACCATCCTATCTTACACAGAATAT
TTACTATTAATAAAATACTAATTTATTACTCCTCTCTTCCTCTTCCATTT
TTCTACTCTATCCTACTCTTCTATTTTCTATTTACATACTTTCCACTCTT
ATCTTCTTTTTATATTTTCCTTCTATTCCTACTTCATACCCGACCTCTCA
TTACATTCCACTTCATATTTTATTTCGCCTCCTTTTATCCCAATAGTCTA
TATACTTTTTATTTTTTCCTTTTTTTATTTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_m07.b1 MSMg01no156_m07.b1 CHROMAT_FILE:
MSMg01no156_m07.b1 PHD_FILE: MSMg01no156_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:59 2005
         (287 letters)



>mm_chr4_20068108_20068794
          Length = 687

 Score =  478 bits (247), Expect = e-139
 Identities = 277/287 (96%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatctatccttcaaccatagttcctgaaatgcctatcttgagctgaacagtgatagttt 60
           ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 373 tcatcaatccttcaaccatagttcctgaaatgcctatcttgagctgaagagtgatagttt 314

                                                                       
Query: 61  gcatattgtgtatcttactgtgtgtgtacatacctcgtactcatgtccctgagagtctag 120
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 313 acatattgtgtatcttactgtgtgtgtacatacctcatactcatgtccctgagagtccag 254

                                                                       
Query: 121 tgcccctgtatgcctacatacctattaataaaccacggttacacaccaaacctcagtggt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 253 tgcccctgtatgcctacatacctattaataaaccacagttacacaccaaacctcagtggt 194

                                                                       
Query: 181 tttcaaacttcctaatggtctgatgctttaatgcagttccttcatgttgtggtgacgccc 240
           |||||| |||||||||| |||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 193 tttcaaccttcctaatgctctgatgctttagtgcagttcct-catgttgtggtgacgccc 135

                                                          
Query: 241 aaacctaaaattattttcattgctactttataactgtaattttgcta 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aaacctaaaattattttcattgctactttataactgtaattttgcta 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)