Query= MSMg01no156_m17.b1 MSMg01no156_m17.b1 CHROMAT_FILE:
MSMg01no156_m17.b1 PHD_FILE: MSMg01no156_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:01 2005
(331 letters)
>mm_chr4_93623878_93624609
Length = 732
Score = 582 bits (301), Expect = e-171
Identities = 316/321 (98%), Gaps = 1/321 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggacaagatggctagaaagcaatagagacataacaggttatgggattgggaat 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcaggacaagatggctagaaagcaatagagacgtaacaggttatgggattgggaat 264
Query: 65 ttaatgtctcaacctatgtcacactataaacagaaagggagatattcaataaggcacatg 124
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaatgtctcaatttatgtcacactataaacagaaagggagatattcaataaggcacatg 324
Query: 125 tatggaaatgaaaaatgattggtcacatgggaagtctgcttgaaacaagcatctcacaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatggaaatgaaaaatgattggtcacatgggaagtctgcttgaaacaagcatctcacaat 384
Query: 185 gattgcttagaggcaaatattgtgctcacagccaaggcaaagcacacaggttcctgtttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattgcttagaggcaaatattgtgctcacagccaaggcaaagcacacaggttcctgtttt 444
Query: 245 acattgcacaacaaacagaaaaaactaagactactgaatcagaccaaatgtatgtgaacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acattgcacaacaaacagaaaaaactaagactactgaatcagaccaaatgtatgtgaacc 504
Query: 305 tgaagcctcct-ctttttttt 324
|||||||||| |||||||||
Sbjct: 505 tgaagcctcccactttttttt 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space: 232806
Effective search space used: 232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_m17.g1 MSMg01no156_m17.g1 CHROMAT_FILE:
MSMg01no156_m17.g1 PHD_FILE: MSMg01no156_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:01 2005
(287 letters)
>mm_chr4_93767861_93768547
Length = 687
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%)
Strand = Plus / Minus
Query: 1 actatcagtgatggaaagcttggactgcatgctgctagccaaatcacagcatggggtggc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 487 actatcagtgatggaaagcttggactgcatgctgctagccaaatcaaagcatggggtggc 428
Query: 61 actgtggttggcacatggctatagcagcctaaggcacaaaatgagagcaaggaagtatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actgtggttggcacatggctatagcagcctaaggcacaaaatgagagcaaggaagtatgt 368
Query: 121 aataaacagactccttccattaaatttgatctctagatcaagtgtaactatacaggcaaa 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 367 aataaacagactccttccattaaatttgatctctagatcaagtataactatacaggcaaa 308
Query: 181 actaaacagagacttaatatttagtaaattatgaaacaaaagagagaggatgttaatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actaaacagagacttaatatttagtaaattatgaaacaaaagagagaggatgttaatgta 248
Query: 241 tttcctcttctactttctcctatagtgagtaagtacttccaatcatt 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttcctcttctactttctcctatagtgagtaagtacttccaatcatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
