BAC Information

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BAC

Clone NameMSMg01-157C10
Chromosome4 (Build37)
Map Location 94,750,897 - 94,751,207
singlet/doubletsinglet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
Downstream geneLOC100042411, 2310009E04Rik, Hook1, Cyp2j13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157C10.T7 (MSMg01no157_c10.b1)MSMg01-157C10.TJ (MSMg01no157_c10.g1)
ACCAG357708AG357709
length731735
length of high quality
(start - end)
315 (35 - 349)319 (376 - 694)
definitionCHROMAT_FILE: MSMg01no157_c10.b1 PHD_FILE: MSMg01no157_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:27 2005CHROMAT_FILE: MSMg01no157_c10.g1 PHD_FILE: MSMg01no157_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTGTT
CTACGGTGACTCAGAAGAAACCATTCCTTCCTTAAGTTGCTGCTGCCACA
GCAATTCGAAAAGGAAATCATACATACAACTGCCATACGTGCCAGAACAT
GAGCTGAGGATACATTTAGTGGATACATGTAGTGGGCAGATAGCAGCCAT
TACATGTGCTCTATATGCATAGTCTTTAAATTTTGGAATACCTTTTCTCT
TCTGATCATGCATCTCAAATAGTGACTTTAACCTTTGAAAGTTTCTCTAA
CTGCACCCCTTTCTAGCTTTAAAATCTTGGCCTTATATTTCAGAGTAAAC
TTTTATAGGCCGCCCGCCCCAGGTGGAATCAAACACTTAACAATACTTGT
TGTTTGTTTCTATGAGATCCAAGAGGGAAGAAGCCAGGGCTTAAATCTGA
AGGTGTAGAAAAAATTAAAAAAAAAAAAAAAAAAGAAGTGTGAGTCACAG
CCCTAACTCTGAAAGAGTTTACAGAATGGTTTGTTAGCCAGAGCTGAATT
CTAGAAGGGTAGGCAAAGCACTTGATATAAAAAGAGGTGGTTTGTGAAGA
CTACAGAGAAATGGGCTTTGTTTATGGTTTCTATTTCTGTGAAGAGACAC
TATGATCCCTCACCTCCCAACTCTTATAAAGGAAAACATTTGACTGGGGC
TGGCTTATAATTCCAGAGGTTTAGTCTATTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACATC
TCTTGTGTTTTACCCCCCCCCCCATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGAAGACTTATTTATAATAGCCGGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCAAAACCTAGAATACCCAAGATATAAGATACAATTTCCTAAACACAT
GAAACTCAAGAAAAATGAAGACTGAAGTGTGCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_c10.b1 MSMg01no157_c10.b1 CHROMAT_FILE:
MSMg01no157_c10.b1 PHD_FILE: MSMg01no157_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:27 2005
         (315 letters)



>mm_chr4_94750693_94751407
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgttctacggtgactcagaagaaaccattccttccttaagttgctgctgcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttgttctacggtgactcagaagaaaccattccttccttaagttgctgctgcca 264

                                                                       
Query: 65  cagcaattcgaaaaggaaatcatacatacaactgccatacgtgccagaacatgagctgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagcaattcgaaaaggaaatcatacatacaactgccatacgtgccagaacatgagctgag 324

                                                                       
Query: 125 gatacatttagtggatacatgtagtgggcagatagcagccattacatgtgctctatatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatacatttagtggatacatgtagtgggcagatagcagccattacatgtgctctatatgc 384

                                                                       
Query: 185 atagtctttaaattttggaataccttttctcttctgatcatgcatctcaaatagtgactt 244
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 atagtctttaaatttcggaataccttttctcttctgatcatgcatctcaagtagtgactt 444

                                                                       
Query: 245 taacctttgaaagtttctctaactgcacccctttctagctttaaaatcttggccttatat 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taacctttgaaagtttctttaactgcacccctttctagctttaaaatcttggccttatat 504

                      
Query: 305 ttcagagtaaa 315
           |||||||||||
Sbjct: 505 ttcagagtaaa 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)