BAC Information

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BAC

Clone NameMSMg01-157D14
Chromosome4 (Build37)
Map Location 145,660,387 - 145,661,073
singlet/doubletsinglet
Overlap geneLOC100041433
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390
Downstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157D14.T7 (MSMg01no157_d14.b1)MSMg01-157D14.TJ (MSMg01no157_d14.g1)
ACCAG357762AG357763
length734734
length of high quality
(start - end)		676 (39 - 714)663 (68 - 730)
definitionCHROMAT_FILE: MSMg01no157_d14.b1 PHD_FILE: MSMg01no157_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:32 2005CHROMAT_FILE: MSMg01no157_d14.g1 PHD_FILE: MSMg01no157_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TGATGAATACTAAGATGGGATGGTTGGGTAAAGCATTTGTCACACTCACT
GCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAACTCTCAGAC
TGCCTTTGTCAGTAAAGCATTTGTCACATTCATTACATTTGTAAGGTTTC
TCTCCTGTATGAATTCTCTGATGCTTTCTCAGAGTGCATTTGTCAGTAAA
GCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTC
TCTGATGCTTTCTCAGAGTGCATTTGTCAGTAAAGCATTTGTCGCATTCA
CTACATTTGTAAGGTTTCTCTCCTGAATGAATTGTATGATGAATACTAAG
ATGGGAAGGTTGGGTAAAGCATTTGTCACTTTCACTATATATGTAAGATT
TCTTTCCTGGATAAATTCTCTGCTGACTTTGAAGATTGTCACTCTGAGTA
AAGCATTTGTCAAATTCACCACAAGTGTAAGTATTCATTTCACTATTGTT
TTGTCTAGAAACCAAAACCTCATCAAGATTTTTATTTCTGTTGTGTTCTT
TCTTCTCTATGTGGGTTCCTTGATTGAGACTAATGATAGAAGACCCCTTT
AAACAGTTTACACAGTCTTTATATGTGCAAACTCCTTTAGTGGTCCCAGT
TTTATGTCTTTTTAGGTTTGAGGATTGGAGAGTG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATACAGGAGAAAAACCTTACAAATGCAGCGAAT
GTGACAAATGTTTTACTACAAAAGGCAATCTGATAATTCATCAGAGAATT
CATAGAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTAC
CCGCAAATTCCATCTTAATAATCATCAGAAAATTCATACAGGAGAGAAAC
CTTACAAGTAGATTGTATGTGACAAATACAATACTCACAATTTCAGTCTT
AGAAATCATCAATTATTTCATACAGTAGAGAATCTTTATAAATGAAGTGA
ACGAGACAATCCTTTAGCAAGATATATCATCTCAAAATTCATTAGAGAAT
ACTTAGAGAAGACAAACTTTTCAAATATATTGTAGGTATGAATCCTTTCC
TTTTGGCCTAGTTCCCAGAATGTAACAGTGAATACTTACAGGCTAGAAAC
TTAACTCATGCATTGTATGAAGAAATAGCTTTGACTTCATTTCAGGTCAG
AGAGAACATCTAAGAACATTTTAGGGGAAAGTATTTCTTTTGGGGAAAAT
GTTGTATTCTTGACAACACTTGAGGCTCCACACTAGAGAATTAGTATGAT
TATGAAAATCATGTGAAAACTTTCGTGCAATGTTCAAATCTTAGATACTG
TCAACTATTTATGTTCGGAGAAACTCTGAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_d14.b1 MSMg01no157_d14.b1 CHROMAT_FILE:
MSMg01no157_d14.b1 PHD_FILE: MSMg01no157_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:32 2005
         (676 letters)



>mm_chr4_145660197_145661273
          Length = 1077

 Score = 1067 bits (552), Expect = 0.0
 Identities = 648/694 (93%), Gaps = 29/694 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgatgaatactaagatgggatggttgggtaaagcatttgtcacactcactgc 64
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattctacgatgaaaactaagatgggatggttgggtaaagcatttgtcacactcactgc 250

                                                                       
Query: 65  atttgtaaggtttctctcctgtatgaattctctgatgaactctcagact-gcctttgtca 123
           ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct: 251 atttgtaaggtttctctccagtatgaattctctgatgaactctcaga-tagcctttgtca 309

                                                                       
Query: 124 gtaaagcatttgtcacattcattacatttgtaaggtttctctcctgtatgaattctctga 183
           ||||||||||||||||| ||| | |||||||||||||||||||| |||||||||||||||
Sbjct: 310 gtaaagcatttgtcacactcactgcatttgtaaggtttctctccagtatgaattctctga 369

                                                                       
Query: 184 tg--ctttctcagagt-gcatttgtcagtaaagcatttgtcgcattcactacatttgtaa 240
           ||  |  ||||||| | || ||||||||||||||||||||| || ||||| |||||||||
Sbjct: 370 tgaac--tctcaga-tagcctttgtcagtaaagcatttgtcacactcactgcatttgtaa 426

                                                                       
Query: 241 ggtttctctcctgtatgaattctctgatgctttctcagagtgcatttgtcagtaaagcat 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggtttctctcccgtatgaattctctgatgctttctcagagtgcatttgtcagtaaagcat 486

                                                                       
Query: 301 ttgtcgcattcactacatttgtaaggtttctctcctgaatgaattgtatgatgaatacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttgtcgcattcactacatttgtaaggtttctctcctgaatgaattgtatgatgaatacta 546

                                                                       
Query: 361 agatgggaaggttgggtaaagcatttgtcactttcactatatatgtaagatttctttcct 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 547 agatgggaaggttgggtaaagcatttgtcactttcactatatttgtaagatttctttcct 606

                                                                       
Query: 421 ggataaattctctgctgactttgaagattgtcactctgagtaaagcatttgtcaaattca 480
           || |   |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 607 ggct---ttctctgctgactttgaagactgtcactctgagtaaagcatttgtcaaattca 663

                                                                       
Query: 481 ccacaagtgtaagtattcatttcactattgttttgtct------------------agaa 522
           |||||||||||||| |||||||||||||||||||||||                  ||||
Sbjct: 664 ccacaagtgtaagtgttcatttcactattgttttgtctcacaatgggtttatgtttagaa 723

                                                                       
Query: 523 accaaaacctcatcaagatttttatttctgttgtgttctttcttctctatgtgggttcct 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 accaaaacctcatcaagatttttatttctgttgtgttctttcttctctatgtgggttcct 783

                                                                       
Query: 583 tgattgagactaatgatagaagacccctttaaacagtttacacagtctttatatgtgcaa 642
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgattgagactaatgatagaagacccctttaaacagtttacacagtctttatatgtgcaa 843

                                             
Query: 643 actcctttagtggtcccagttttatgtcttttta 676
           ||| ||||||||||||||||||||||||||||||
Sbjct: 844 acttctttagtggtcccagttttatgtcttttta 877



 Score =  348 bits (180), Expect = e-100
 Identities = 292/332 (87%), Gaps = 16/332 (4%)
 Strand = Plus / Plus

                                                                       
Query: 151 ttgtaaggtttctctcctgtatgaattctctgatg--ctttctcagagt-gcatttgtca 207
           |||||||||||||||||||||||||||||||||||  |  ||||||| | || |||||||
Sbjct: 1   ttgtaaggtttctctcctgtatgaattctctgatgaac--tctcaga-tagcctttgtca 57

                                                                       
Query: 208 gtaaagcatttgtcgcattcactacatttgtaaggtttctctcctgtatgaattctctga 267
           |||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 58  gtaaagcatttgtcacactcactgcatttgtaaggtttctttcctgtatgaattctctga 117

                                                                       
Query: 268 tgctttctcagagtgcatttgtcagtaaagcatttgtcgcattcactacatttgtaaggt 327
           ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tgctttcccagaatgaatttgtcagtaaagcatttgtcgcattcactacatttgtaaggt 177

                                                                       
Query: 328 ttctctcctgaatgaattgtatgatgaatactaagatgggaaggttgggtaaagcatttg 387
           |||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||
Sbjct: 178 ttctctcctgaatgaattctacgatgaaaactaagatgggatggttgggtaaagcatttg 237

                                                                       
Query: 388 tcactttcact--atatatgtaagatttctttcctggataaattctctgctga-ctttga 444
           ||||  |||||  || | |||||| ||||| ||| | || ||||||||| ||| || | |
Sbjct: 238 tcacactcactgcat-t-tgtaaggtttctctccagtatgaattctctgatgaactctca 295

                                           
Query: 445 agattgtcactctg--agtaaagcatttgtca 474
            ||| | | || ||  ||||||||||||||||
Sbjct: 296 -gatag-c-ctttgtcagtaaagcatttgtca 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 3
Length of query: 676
Length of database: 1077
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1067
Effective search space:   710622
Effective search space used:   710622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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