Query= MSMg01no157_d23.b1 MSMg01no157_d23.b1 CHROMAT_FILE:
MSMg01no157_d23.b1 PHD_FILE: MSMg01no157_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:33 2005
(321 letters)
>mm_chr4_6791502_6792222
Length = 721
Score = 605 bits (313), Expect = e-178
Identities = 316/317 (99%)
Strand = Plus / Plus
Query: 5 gaattcttgacagtcagcccttccagctctgctttcagcagatgcaggcaccaaaaccaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgacagtcagcccttccagctctgctttcagcagatgcaggcaccaaaaccaa 264
Query: 65 catgatgtctaaccctcggcatacatgctgtagcttttgccatagtgagcactcagtgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgatgtctaaccctcggcatacatgctgtagcttttgccatagtgagcactcagtgaa 324
Query: 125 attttcataaatgaatagaaggcaaacgtttggggaaatgacacatggattaaaatgtca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attttcataaatgaatagaaggcaaacgtttggggaaatgacacatggattaaaatgtca 384
Query: 185 gtggttgcttccacaggtcaacactacagaaattatgcttcctgggctgctcacacttgc 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtggttgcttccacagatcaacactacagaaattatgcttcctgggctgctcacacttgc 444
Query: 245 actgaatttcaagaaatgtttccaattgtcctccacagtcattctaagttactgtccagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actgaatttcaagaaatgtttccaattgtcctccacagtcattctaagttactgtccagg 504
Query: 305 aatgttcacaaatgtct 321
|||||||||||||||||
Sbjct: 505 aatgttcacaaatgtct 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_d23.g1 MSMg01no157_d23.g1 CHROMAT_FILE:
MSMg01no157_d23.g1 PHD_FILE: MSMg01no157_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:33 2005
(665 letters)
>mm_chr4_6950300_6951363
Length = 1064
Score = 1208 bits (625), Expect = 0.0
Identities = 655/665 (98%), Gaps = 1/665 (0%)
Strand = Plus / Minus
Query: 1 agagatcatgtttcctgccatctttctgttgttctgcaagttcctgttctccttaagatg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 864 agagatcatgtttcctgccatctttctgttgttctgcaagttcctgttctaattaagatg 805
Query: 61 taagagaaatggattctatttcctgaagggaaaaacaaaacaaacaaacaaacacacaca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 804 taagagaaatggattctatttcctgaagggaaaaacaaaacaaacaaacaaacaaacaca 745
Query: 121 cacaaaacaaagttctgtttcaagggatttgtgtaagaaagtgaagcaaaaattgagcta 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caaaaaacaaagttctgtttcaagggatttgtgtaagaaagtgaagcaaaaattgagcta 685
Query: 181 cttaaaaactacttacttaacatagttactttaaataaagatgtatgctttttcttctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cttaaaaactacttacttaacatagttactttaaataaagatgtatgctttttcttctta 625
Query: 241 attctgccttaacaaaatttcattaacatttgtgcatgtgaccttaataaaagatattaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attctgccttaacaaaatttcattaacatttgtgcatgtgaccttaataaaagatattaa 565
Query: 301 ttgtgctataaatgttcgcctgcctgcagatttcctgaagaaattactgcatgtaactag 360
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 564 ttgtgctataaatgttcgcctgcctgcagatttcctgaacaaattactgtatgtaactag 505
Query: 361 aatccttccaggtcgctacacagagcttctcctgctgtctatggctctgtagacttaata 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 aatccttccaggtcgctacacagagcttctcctgctgtctatagctctgtagacttaata 445
Query: 421 aaccaatgtgccatagcttatttacatttttttcttatgggtgagaatacacttgatttt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 aaccaatgtgccatagcttatttacatttttttcttatgggtgagaatacacttgattct 385
Query: 481 ttctcccactgccattgccagcttgcaagcttgtcttgtgcagtcataatcagatgttat 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctcccactgccattgccagcttgcaagcttgtcttgtgcagtcataatcagatgttac 325
Query: 541 atttgtttccttgaagaaaagtgtttcaaagggtgcacaggtttttcatttcaatgatac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttgtttccttgaagaaaagtgtttcaaagggtgcacaggtttttcatttcaatgatac 265
Query: 601 agtttactttctaggtgggagctaattgtagtaatatatttgccacaaaaaaatagttct 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 agtttactttctaggtgggagctaattgtagtaatatatttgccac-aaaaaatagttct 206
Query: 661 aattg 665
|||||
Sbjct: 205 aattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1064
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1054
Effective search space: 690370
Effective search space used: 690370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
