Query= MSMg01no157_e23.b1 MSMg01no157_e23.b1 CHROMAT_FILE:
MSMg01no157_e23.b1 PHD_FILE: MSMg01no157_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:37 2005
(630 letters)
>mm_chr4_6791587_6792615
Length = 1029
Score = 1172 bits (606), Expect = 0.0
Identities = 624/630 (99%), Gaps = 1/630 (0%)
Strand = Plus / Plus
Query: 1 tacatgctgtagcttttgccatagtgagcactcagtgaaattttcataaatgaatagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacatgctgtagcttttgccatagtgagcactcagtgaaattttcataaatgaatagaag 260
Query: 61 gcaaacgtttggggaaatgacacatggattaaaatgtcagtggttgcttccacaggtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gcaaacgtttggggaaatgacacatggattaaaatgtcagtggttgcttccacagatcaa 320
Query: 121 cactacagaaattatgcttcctgggctgctcacacttgcactgaatttcaagaaatgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactacagaaattatgcttcctgggctgctcacacttgcactgaatttcaagaaatgttt 380
Query: 181 ccaattgtcctccacagtcattctaagttactgtccaggaatgttcacaaatgtctacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaattgtcctccacagtcattctaagttactgtccaggaatgttcacaaatgtctacat 440
Query: 241 ttacatcatttggataaaatgtccatttgtatttcaggcatgttgataagaataaagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacatcatttggataaaatgtccatttgtatttcaggcatgttgataagaataaagcag 500
Query: 301 agtacagaactggcaattatcctattaacctgatgattgtggacaaccccacttgatact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtacagaactggcaattatcctattaacctgatgattgtggacaaccccacttgatact 560
Query: 361 ccaaacctccagataatattttttttttatttccatgaccttattgggtaatttatctag 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaacctccagataatattttttttt-atttccatgaccttattgggtaatttatctag 619
Query: 421 ttaacaaatatcatctattccaagtctctgatttaatttctgttctataggaaattattt 480
||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 620 ttaacaaatgtcatctattccaagtctctgatttcatttctgttctatagaaaattattt 679
Query: 481 taaaaattcagttactctaaatatctactatataaagatatgactattttagcattgaag 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 680 taaaaattcagttactctaaatatctactatataaaggtatgactattttagcattgaag 739
Query: 541 ctgtgtttcaaactctgtgctgacaatgtaaagggaagcatggttacagagacctcctct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctgtgtttcaaactctgtgctgacaatgtaaagggaagcatggttacagagacctcctct 799
Query: 601 ttgttctcaagtggctggcatgaattgaaa 630
||||||||||||||||||||||||||||||
Sbjct: 800 ttgttctcaagtggctggcatgaattgaaa 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space: 631780
Effective search space used: 631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_e23.g1 MSMg01no157_e23.g1 CHROMAT_FILE:
MSMg01no157_e23.g1 PHD_FILE: MSMg01no157_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:37 2005
(299 letters)
>mm_chr4_6950665_6951363
Length = 699
Score = 555 bits (287), Expect = e-162
Identities = 296/299 (98%)
Strand = Plus / Minus
Query: 1 agagatcatgtttcctgccatctttctgttgttctgcaagttcctgttctaactaagatg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 499 agagatcatgtttcctgccatctttctgttgttctgcaagttcctgttctaattaagatg 440
Query: 61 taagagaaatggattctatttcctgaagggaaaaacaaaacaaacaaacaaacacacaca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 taagagaaatggattctatttcctgaagggaaaaacaaaacaaacaaacaaacaaacaca 380
Query: 121 cacaaaacaaagttctgtttcaagggatttgtgtaagaaagtgaagcaaaaattgagcta 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaaaaacaaagttctgtttcaagggatttgtgtaagaaagtgaagcaaaaattgagcta 320
Query: 181 cttaaaaactacttacttaacatagttactttaaataaagatgtatgctttttcttctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttaaaaactacttacttaacatagttactttaaataaagatgtatgctttttcttctta 260
Query: 241 attctgccttaacaaaatttcattaacatttgtgcatgtgaccttaataaaagatatta 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 attctgccttaacaaaatttcattaacatttgtgcatgtgaccttaataaaagatatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
