BAC Information

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BAC

Clone NameMSMg01-157G07
Chromosome4 (Build37)
Map Location 55,510,787 - 55,511,101
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348
Downstream geneKlf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157G07.T7 (MSMg01no157_g07.b1)MSMg01-157G07.TJ (MSMg01no157_g07.g1)
ACCAG357885AG357886
length724723
length of high quality
(start - end)
319 (35 - 353)290 (64 - 353)
definitionCHROMAT_FILE: MSMg01no157_g07.b1 PHD_FILE: MSMg01no157_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:43 2005CHROMAT_FILE: MSMg01no157_g07.g1 PHD_FILE: MSMg01no157_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAATGA
GAAACGGTCTTCTCTTCTCCCTGTAAGTTCATCTGGTGTGGCCAGGGAGC
AGAGCACCACACATGGGAACCAGTGAGCAAAAGCTTGACTCTGAGTAAGA
GGATGGGGCAGGGAAGGTGAGTGGCTCACAGCCGGCAGGAGACAAGAGCA
CTGCCAGTATGGATGGAGGGTGGACAGGGCCTGAACTTGAAAGGGCTTGC
GTGCTGGCTCAGATGGGCTGGGATCATCTTGGTGACGGAAACAGAGAACC
ACGGAGAGGTTGTGCGACGAGCCACTTGCAAGGCAAGAGGAATTCAAAAT
CTCTTGAGGCTCACCACCGCCTTTTGGGAATCAAATTTTAGAGGGACCCA
TGAGGACAGCAGGGTGAGGCTCGGTGGTGGAGGGTTTACCTAACATCCAT
GAGGAATCAGTCTCTAGTACTGCAAGAGACAATTAAAATTTAAAATAAAT
TTTAAATTATTAAATTAATATATTAATGTAAAATAATTTTTAAAAATTTA
AAGTAAGACTGAGGGCTTATCTTAGTTGGGAGAGTTCTTGTCTACTATCT
ACAAAGGATTCAATCGTTAGCATAACATAGAATCAGGTGGCTGGCTCTTT
CCTATAGCCCTGGCACTCGGGAGGCAGAGACCGAAGGATCAGTGTTCCAA
ATTCATTCCAACTATATACCCAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTTTTTAAAACATGGTCTCACTACGTTGCCCAGATTG
ACCTTGAAATCCTGGGGTCAAAAAAAAAATCCTCTCGAGTAGCTGGGACT
CTTGGCCCACACCACCATGTCCAGCCCTGTGGTAAATGTTATATGTCTTA
TATTTTTCTCATGGAATCTTTTCCCAGCACCCTCTCAGGTCAGTATGATC
ATTTGTCTCATTTTACAGTTGAAGAAAGGAAGACCGAAAGAGATAGCGTA
TTGCAAGTTCAAGAAGGAGGAAGCTATCCATTCATCCATCAGGACCTGAA
CTCTTGGACGCGCCACCGATGCCTGGCTCCAATTCTCCAGAACCCTCCTC
AGGCCTTCCCAAGAAATCACACACCAATTCAACACAAGTTCATCTCTGAG
TGGCCCTGTCTGATGACCAGGACTGTGTGGAGGATGACTGAAGCCAATCC
CATAGCTCTAAATGATCCCAGCACCTGTTCACAATGGTGACCCAGCAATA
TCTCAACAGAGCTGAGGGAAACACAATACGTAGCTCTCCTGTGTGCTGGG
AATGAAGACAAGCCATAAGGTGAGGATTTCCAGGCCATACACCATCAGGC
AGTCAGAACTAGGCCCACTTCAGCCTATAGGCTGAGTTCCAGAGAAATGG
TAGCTACATCATATGTTATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_g07.b1 MSMg01no157_g07.b1 CHROMAT_FILE:
MSMg01no157_g07.b1 PHD_FILE: MSMg01no157_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:43 2005
         (319 letters)



>mm_chr4_55510583_55511301
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatgagaaacggtcttctcttctccctgtaagttcatctggtgtggccaggga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatgagaaacggtcttctcttctccctgtaagttcatctggtgtggccaggga 264

                                                                       
Query: 65  gcagagcaccacacatgggaaccagtgagcaaaagcttgactctgagtaagaggatgggg 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagagcaccacagatgggaaccagtgagcaaaagcttgactctgagtaagaggatgggg 324

                                                                       
Query: 125 cagggaaggtgagtggctcacagccggcaggagacaagagcactgccagtatggatggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagggaaggtgagtggctcacagccggcaggagacaagagcactgccagtatggatggag 384

                                                                       
Query: 185 ggtggacagggcctgaacttgaaagggcttgcgtgctggctcagatgggctgggatcatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtggacagggcctgaacttgaaagggcttgcgtgctggctcagatgggctgggatcatc 444

                                                                       
Query: 245 ttggtgacggaaacagagaaccacggagaggttgtgcgacgagccacttgcaaggcaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggtgacggaaacagagaaccacggagaggttgtgcgacgagccacttgcaaggcaaga 504

                          
Query: 305 ggaattcaaaatctc 319
           |||||||||||||||
Sbjct: 505 ggaattcaaaatctc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)