Query= MSMg01no157_p08.b1 MSMg01no157_p08.b1 CHROMAT_FILE:
MSMg01no157_p08.b1 PHD_FILE: MSMg01no157_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:24 2005
(316 letters)
>mm_chr4_44260880_44261595
Length = 716
Score = 594 bits (307), Expect = e-174
Identities = 313/317 (98%), Gaps = 4/317 (1%)
Strand = Plus / Plus
Query: 4 ggaattctccatttgattctacaaggctttctgctaaggacgctactcgggtccaaccta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccatttgattctacaaggctttctgctaaggacgctactcgggtccaaccta 263
Query: 64 ccttgctccagtaagatggtcctatttgtttattttcttttgggagtacatttttaaaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccttgctccagtaagatggtcctatttgtttattttcttttgggagtacatttttaaaaa 323
Query: 124 agatttatttat----gttaggcatatgagtacaccaccattgcttccttcagacacacc 179
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agatttatttatttatgttaggcatatgagtacaccaccattgcttccttcagacacacc 383
Query: 180 agaagagggcatcagaacctgttacagatggttgtgagccaccatgttgttgctgggaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaagagggcatcagaacctgttacagatggttgtgagccaccatgttgttgctgggaat 443
Query: 240 tgaactcagaacctcttgaagagcagtcagtgctcttacgctctgagccatctctccagc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaactcagaacctcttgaagagcagtcagtgctcttacgctctgagccatctctccagc 503
Query: 300 ccgggaatacatttttg 316
|||||||||||||||||
Sbjct: 504 ccgggaatacatttttg 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_p08.g1 MSMg01no157_p08.g1 CHROMAT_FILE:
MSMg01no157_p08.g1 PHD_FILE: MSMg01no157_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:24 2005
(648 letters)
>mm_chr4_44442188_44443235
Length = 1048
Score = 899 bits (465), Expect = 0.0
Identities = 523/543 (96%), Gaps = 2/543 (0%)
Strand = Plus / Minus
Query: 105 aagaacccaacacaaatgcacacacatatatacataagtgtacatgtgcacacacatgca 164
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1048 aagaacccaacacaaatgcacacacatatgtacataagtgtacatgtgcacacacatgca 989
Query: 165 tttatgcatgtacatgcgcacacacatacatattctcatatgcacattcacacacataca 224
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 988 tttatgcatgtacatgtgcacacacatacatattttcatatgcacattcacacacacaca 929
Query: 225 cacagatacatacacagatacacatatatactcacatacatgcacacacaaatacacaca 284
||||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 928 cacagatgcatacatagatacacacatatattcacatacatgcacacacaaatacacaca 869
Query: 285 ctcattcac--acacacacacacttggaaggcccgtggtcaccagagcctcaacttctag 342
| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 868 cacattcacatacaaacacacacttggaaggcccgtggtcaccagagcctcagcttctag 809
Query: 343 tccagaaggactgtagccaaggctgtttctagcctcctgtaagacacacatctctgccca 402
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tccaggaggactgtagccaaggctgtttctagcctcctgtaagacacacatctctgccca 749
Query: 403 gaaaccaccaagggcagcgagggccaatccactgtcggatccaaccaaatcctcaatccc 462
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 748 gaaaccaccaagggcagcgagggccgatccactgtcggatccaaccaaatcctcaatccc 689
Query: 463 tgagcacaggaagctgtcagcgcctcatctgctgtcacacagagttcccaggagccacgc 522
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 688 tgagcacaggaagctgtcagtgcctcatctgctgtcacacagagttcccaggagccatgc 629
Query: 523 ccagggcctggcacacaggaagtgcttgacggagcccagtgagtgaataaagaaattcac 582
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 628 ccagggcctggcacacaggaagtgcttgaccgagcccagtgagtgaataaagaaattcac 569
Query: 583 agaaggaaacttatctagtgagggaaaaacagcagcatttactaaacaatgccctatgat 642
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 568 agaaggaaacttatccagtgagggagaaacagcagcatttactaaacaatgccctatgat 509
Query: 643 aaa 645
|||
Sbjct: 508 aaa 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
