Query= MSMg01no158_l04.b1 MSMg01no158_l04.b1 CHROMAT_FILE:
MSMg01no158_l04.b1 PHD_FILE: MSMg01no158_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:16 2005
(691 letters)
>mm_chr4_9349038_9350125
Length = 1088
Score = 1236 bits (639), Expect = 0.0
Identities = 675/687 (98%), Gaps = 3/687 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaagactaccagaagaaatataaatattcttattagttacagtaaaaaaaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaagactaccagaagaaatataaatattcttattagttacagtaaaaaaaaaa 264
Query: 65 caacacacacacacacacacagagtaaagtttggtttttataagtaaatgctctattctc 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 -aaaacacacacacacacacagagtaaagtttggtttttataagtaaatgctctatgctc 323
Query: 125 gttctttttctatcacctctcaactcacattcaccatgtaagctatgtctctgaagagga 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttctttttctatca-ctctcaactcacattcaccatgtaagctatgtctctgaagagga 382
Query: 185 gatcaaaaggaccataaagaaggaacctggggtgtagcccttcttagaaaggaagagctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gatcaaaaggaccataaagaaggaacctggggtgtagcccttcttagaaaggaagagctt 442
Query: 245 ggagggacagtctcttgtttttcagggaccaaaaacattgctaagccttggactagacat 304
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 agagggacagtctcttgtttttcaggaaccaaaaacattgctaagccttggactagacat 502
Query: 305 aaaaaggacagcattggcgagggagtaccttgttcacatagagtttgcctagcctgagca 364
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 503 -aaaaggacagcattggtgagggagtagcttgttcacatagagtttgcctagcctgagca 561
Query: 365 aggtcctgtgttcaaagcttagtacaagcaaaaccccaactcccatacacacacacctta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aggtcctgtgttcaaagcttagtacaagcaaaaccccaactcccatacacacacacctta 621
Query: 425 ttcacagcttggatctttctgaaatcaaagtaagtggagtaagaccaccaaccactgttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttcacagcttggatctttctgaaatcaaagtaagtggagtaagaccaccaaccactgttc 681
Query: 485 atgaacttcctgtgagacaagcgtccattctccccagacatttccaagaaacaatcttac 544
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 682 atgaacttcctgtgagacaagcgtccgttctccccagacatttccaagaaacaatcttac 741
Query: 545 ccaagtctagcttgacgagtgtgcgtgagaatatgctcacacatgcaggagagacgatcg 604
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 742 ccaagtctagcttgacgagtgtgcgtgagaacatgctcacacatgcaggagagacgatcg 801
Query: 605 gctgttctactgtgaaaggaactaccctcactgagccttacgagcactgagtggcagcca 664
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gctgttctacagtgaaaggaactaccctcactgagccttacgagcactgagtggcagcca 861
Query: 665 ggcctccctgtagtacagtttcctatg 691
|||||||||||||||||||||||||||
Sbjct: 862 ggcctccctgtagtacagtttcctatg 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1088
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1078
Effective search space: 734118
Effective search space used: 734118
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_l04.g1 MSMg01no158_l04.g1 CHROMAT_FILE:
MSMg01no158_l04.g1 PHD_FILE: MSMg01no158_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:16 2005
(647 letters)
>mm_chr4_9437316_9438362
Length = 1047
Score = 1212 bits (627), Expect = 0.0
Identities = 642/647 (99%)
Strand = Plus / Minus
Query: 1 tagttccaagaatggaggcattataactctcagtttcagcagttacagaagggagagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tagttccaagaatggaggcattataactctcagtttcagcagttacagaagggagagatc 782
Query: 61 cgggctgctagaaagctctggtgaggtcatttatgtcaaaggccaattgtggagtgatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cgggctgctagaaagctctggtgaggtcatttatgtcaaaggccaattgtggagtgatgt 722
Query: 121 ggaaaataagagggctatctacacaccctttactgtcctgagcaagaaaaatttgcaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggaaaataagagggctatctacacaccctttactgtcctgagcaagaaaaatttgcaaca 662
Query: 181 tgattgttaaatactttcaaaggttaataatttcgtacattaaactatgagtttatttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgattgttaaatactttcaaaggttaataatttcgtacattaaactatgagtttatttac 602
Query: 241 tgccaagtttttttataataaaatttaaagaagctggtattttctatgtttaaattatca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 601 tgccaagtttttttataataaaatttaaagaagctggtattttctatgtttaaattatta 542
Query: 301 tatctggagttttacaaagaaggtatttaagttaacatgaaattctttttattgatcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatctggagttttacaaagaaggtatttaagttaacatgaaattctttttattgatcaag 482
Query: 361 acatattcattcaaccaggtatgatagcacatgcctataatttccccaaacaggaagcca 420
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 481 acatattcattcaatcaggtatgatagcacatgcctataatctccccaaacaggaagcca 422
Query: 421 aggcaggtggattgcacattggaggttaccctgacctatagaaggagacactgtatatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggcaggtggattgcacattggaggttaccctgacctatagaaggagacactgtatatga 362
Query: 481 catggggagggctgcacatttttttcaaaatcagttctcaaaagagcaattggtagatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catggggagggctgcacatttttttcaaaatcagttctcaaaagagcaattggtagatta 302
Query: 541 gaactagcagtggaagagatggcactcagtgtgctactaaaaaactcttctctccaaaga 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 301 gaactagcagtggaagagatggcactcagtgtgctactaaaaaactctcctctccaaaga 242
Query: 601 caatgggcatgtagggcaggcagcatgagagcagggccacctatggg 647
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 caatgggcatgtagggcaggcaacatgagagcagggccacctatggg 195
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
