BAC Information

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BAC

Clone NameMSMg01-158M03
Chromosome4 (Build37)
Map Location 45,465,714 - 45,465,943
singlet/doubletsinglet
Overlap geneShb
Upstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1
Downstream geneLOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158M03.T7 (MSMg01no158_m03.b1)MSMg01-158M03.TJ (MSMg01no158_m03.g1)
ACCAG358880AG358881
length714712
length of high quality
(start - end)
231 (117 - 347)288 (65 - 352)
definitionCHROMAT_FILE: MSMg01no158_m03.b1 PHD_FILE: MSMg01no158_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:20 2005CHROMAT_FILE: MSMg01no158_m03.g1 PHD_FILE: MSMg01no158_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGAG
TGGCTTTGCCCTTCGGCTCGGCAGGTCAGAGATCTCCATGGGGATGGAGA
CTGTATTTCGCCCGAGGTCAAAGCTCTGCCTGCCCTGTGCACAGATGGGG
CCTTACCCAGCTTCAAGCCTGGTGCCCAGTGAGTGCTGGGAAGTTTGTAG
TTACTGAGTCAGGCCTGGCCACACAAGTCCCACCCACGCTCTCTTCCAGG
CTAGGCTCTGCCAGTGGCCATGTGGCAGCAGGTACTTGGTGCTCACATCT
GTCCTCTTGTGTGTTGGACATCTTTCTCCTGGCCACATGAGGCCAATTGT
TTTTTCTCTCCCCCCCCCCTTTCGTGTGGCCAGTGGCCAGATCTCCTCCC
TTCCCCCCCATGTCTGAATTCACTCTAAGAAACTGAAAGTGTATCCTTCC
TGTCTGTGGAGGAAGCCACTGCCCTGATCCTTGTGAGAGCTGTGTTTGTG
GCCAGCACTGGCTTGTCCCTCCCTTCCTCATTGTCTGCAGCTGTCAGTGC
TTATACACACACTGTGCTCTGTTCGCTTCCCCCTCTGCATAGTCTGTTCT
TATGATCAGTCCATGGAGGAGTTTTCACCTTTCTCCTGTCTCCTGGAATG
TTCTTGGTCCGTCTGTCACCTGAAAAGCTTTCCGAATCACTTTGTGTCCT
CCTCTCTTTTACCT
GTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAAGTTAGCCTGGACTACAGGGTGAGACTCTTCTTT
TTTAAAGATCTCTTTGTTATTTATAATTATGTGTATGTGCACACAAGTAC
AGTTACCCATAGAGACCTTAGGTGTTAGATCCCCTGGGGAACTCAGGTTA
CAGGAGATTGTGATCTGTCTGATTTGTGTGTTGGGAATCAAACTCAGGTC
CTCTGCAAGAACAGCATTAGCTCATAACCACGGAGCCACCTCTCCGGTCC
TGAGGGCCCCGGCCCCTTTCTTTTTCAAGATAGGGTCTCTTTCTGTAGCC
TTGTTTGTGCTCGCCCCTCGTTCTGTAGACCAGGCTGGCCTTGAACTCAC
AGAGACCCACTTGCTTCTGCCTCCTGGGTGCTAGGATCAAAGATCTGCAG
CACCACTGCCTGGCTAAGATACTATTTCTCTAACTAGAGGGCGAGGGAGA
AATACCATGGAAGGAATGCTTCCCTTAGCACTTGATACTTGAGTGTTTAT
TAAACTGAATTTGGATTTAGGCCCTTTGATCCTGTAAAGCCTTTGACTTT
TCCCGATCAAGTGTTGAAACCTCATTAATGGCGAGCTCAGCTAAGGGCCT
AGAACAACGTTTTCTCAACCTGTGGTTTTACGACCTCCTTTGTTTCCTTG
AATGCCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_m03.b1 MSMg01no158_m03.b1 CHROMAT_FILE:
MSMg01no158_m03.b1 PHD_FILE: MSMg01no158_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:20 2005
         (231 letters)



>mm_chr4_45465514_45466144
          Length = 631

 Score =  422 bits (218), Expect = e-122
 Identities = 227/230 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcaaagctctgcctgccctgtgcacagatggggccttacccagcttcaagcctggtgcc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtcaaagctccgcctgccctgtgcacagatggggccttacccagcttcaagcctggtgcc 371

                                                                       
Query: 61  cagtgagtgctgggaagtttgtagttactgagtcaggcctggccacacaagtcccaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cagtgagtgctgggaagtttgtagttactgagtcaggcctggccacacaagtcccaccca 311

                                                                       
Query: 121 cgctctcttccaggctaggctctgccagtggccatgtggcagcaggtacttggtgctcac 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 310 cgctctcttccaggctaggctctgccagtggccgtgtggcagcaggtacttggtgctcac 251

                                                             
Query: 181 atctgtcctcttgtgtgttggacatctttctcctggccacatgaggccaa 230
           ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 250 atctgtcctcttgtgtgttggacatctgtctcctggccacatgaggccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)