BAC Information

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BAC

Clone NameMSMg01-158O10
Chromosome4 (Build37)
Map Location 121,251,939 - 121,252,225
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921
Downstream geneLOC666927, LOC666931, LOC666937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158O10.T7 (MSMg01no158_o10.b1)MSMg01-158O10.TJ (MSMg01no158_o10.g1)
ACCAG358986AG358987
length710714
length of high quality
(start - end)
316 (32 - 347)287 (63 - 349)
definitionCHROMAT_FILE: MSMg01no158_o10.b1 PHD_FILE: MSMg01no158_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:31 2005CHROMAT_FILE: MSMg01no158_o10.g1 PHD_FILE: MSMg01no158_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCAG
TTCTGAGCCCAATTTTTTAATGGGGTTATTTGATTTTCTGGCATCCACCT
CCTTGAGTTTTTTATATATATTGGATATTAGTCCCTATCTGATTTAGGAT
AGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTTTTATTGATA
GTGTATTTTGCCTTGCAGAAGCTCTGCAATTTTATGAAGTCCCATTTGTC
TTACAGCACAACCCACTGCTGTTCTATTCAGGAAATTTTCCCCTGTGCCC
ATATCTTATAGGTTTTTCCCTACTTTCTCCTCTATAGGTTTCAATGGCTT
TGTTTCTCATGCGGAGCCTCTTAATCCACTTAGATTTGACCTCACTAAAC
GGACACTGAAATGGATAAACTCACATTCTTCTACATGATAACCACCAGTT
GTGCCAGCACAATTTGTTGAAAATGCTGTCCTTTTTCCACTGGATGGTTT
TAGCTCCCTTGTCAAAGATCACATGTCTAGAGTGTGTGGGTTCATTTCTG
GGTCTTCAATTCTATTCCATTGGTCAACTTATCTGTCACTGTACCAGTAC
CATGCAGTTTTTATCACAATTGCTCTGCAGTACAGCTTTAGGTCAGGCAT
GGTGATTCCACCAGAGGTTTTTTCTTCCTTGAGAAGAGTTTTTGTTATCC
TACGATTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTACTTCTCCACCCCAAGCTGGCCATTTCCAGCACA
ACACACTTTGTAAACCACAACTTGAGTTCAGGTGCAGGCAGCATCTATCT
CATATCCTCTTTGAGCCTGTCTCTAGCATCCTGAAGGAGCCTTGCTAGCA
CTGGCAATATTCATGTGCTCTAATTCATCCCTGTGGTTTTCTCTAACCCA
CTCAAAATTATCATCCTCATATTGTCCTGTTACAATGGACACCAATTTTC
ACCTGACTAAATCCAATGATCATTTTCCAGGCTACTCATAACCGACCTAT
TTTCATGCGCACCTGACGACCTGCTATCTTCCTTTTATGGTGGTGGTGTG
ATCCCCGCTGATGAAATTGTTCTTAGTTTTTGAGGTGGGGTTTCATTCAA
GACTGTGGAGAAACTCACTAGAATCTCACTAGTGACTAGATATTCCACCT
TTACCTTGAACTTGCAGGTATCTACCTTCCTTGACATCCCCTGTTCTTTA
ACAGTAGGTGTGCGTCATTACTCTTGGCTTGTTTCCTTCTTCAGGAAACA
TTTTCTTCAGTGGCTTCCAGGACACTGAGCTCTCCTGACCTCCCTTCTAC
CATCAGGAAAGCTCCTCACTGTCTTCTGTCCTGGGCTTGTTTCCTGGTTG
GTCCCTCCTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_o10.g1 MSMg01no158_o10.g1 CHROMAT_FILE:
MSMg01no158_o10.g1 PHD_FILE: MSMg01no158_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:31 2005
         (287 letters)



>mm_chr4_121251739_121252425
          Length = 687

 Score =  503 bits (260), Expect = e-147
 Identities = 281/288 (97%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttacttctccaccccaagctggccatttccagcacaacacactttgtaaaccacaact 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttacttctccaccacaagctggccatttccagcacaacacactttgtaaaccacaact 260

                                                                       
Query: 61  tgagttcaggtgcaggcagcatctatctcatatcctctttgagcctgtctctagcatcct 120
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtacaggagcaggcagcatctatctcatatcctctttgagcctgtctctagcatcct 320

                                                                       
Query: 121 gaaggagccttgctagcactggcaatattcatgtgctctaattca-tccctgtggttttc 179
           |||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 321 gaaggatccttgctagcactggcaatattcatgtgctctaatt-agtccctgtggttttc 379

                                                                       
Query: 180 tctaacccactcaaaattatcatcctcatattgtcctgttacaatggacaccaattttca 239
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctaacccactcaaaattatcagcctcatattgtcctgttacaatggacaccaattttca 439

                                                           
Query: 240 cctgactaaatccaatgatcattttccaggctactcataaccgaccta 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctgactaaatccaatgatcattttccaggctactcataaccgaccta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)