BAC Information

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BAC

Clone NameMSMg01-159E04
Chromosome4 (Build37)
Map Location 121,254,245 - 121,254,521
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921
Downstream geneLOC666927, LOC666931, LOC666937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159E04.T7 (MSMg01no159_e04.b1)MSMg01-159E04.TJ (MSMg01no159_e04.g1)
ACCAG359251AG359252
length738737
length of high quality
(start - end)
325 (43 - 367)293 (73 - 365)
definitionCHROMAT_FILE: MSMg01no159_e04.b1 PHD_FILE: MSMg01no159_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:57 2005CHROMAT_FILE: MSMg01no159_e04.g1 PHD_FILE: MSMg01no159_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCATCTGATTCAGAGCTACTAAGAGCTGGCTCCTTGAGCTCATCTAG
TGATGAGTATAGGCTCCTTCTCCTAGAGACCTCAGCTAATTGATCTTTTT
TCTTTTTTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAGTTATTCTTACC
TGACCTAAACTTTTCCTCGGGTTCAAGACCCGTGGAAAGGCCTGTATACT
TATTTTGTGCACCATATTTCCTCTTTGCTCCTACTCTCTCTCCCCGCTTT
ACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCTTGCCTT
AACCATTTGATAATATGTGAAAAGGCACCCCCAAGGCTCCTAACACTGGA
GAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTTTACTTC
TGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACTTACCTT
GTAAAGCTATACTTACGAGTATCCCTGTTCCCCAGCTGAAGAGTTCTGAA
TCCACGCAGTTTAATCCTTCTCAACAGTCTGTGTTGCGGGAACACTTCAT
TACCACCGTTCCTCAGCTGAAGAGTTCTGAATCCAGGCTGGATCCTTCTC
AACAGTCTGTTTTACGGGAACACTTCATTACCATGACCCGCAGTTCTGGT
TCCGGAATGAGGGATCTTCCTTGCGCCGGGGATGGTAA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAATTGGACCTAGAACTTGTAACAAGT
TGGGTAGCAGAATGTGCCTGCTTTACACTGTTTATAATTGTTCTAAGCCC
ATTGTGGTAGTTAGTGTCTGAACAGAGCTAGTTTAGGGAAGTAATTCCCC
AGAACTCATGAGGAAGAGGCAGGAGGATCTCTGTGAATTGAGGCCTGCCT
GATCTACGCTTCGAGTTCCAGGTAAGCTAAAGCTACATGAGAAGACCATG
TCATGTAAGTTAAAATTAAAATTAAATGTAAGTATTGTTCTATTTGTGAC
ACTAGATGGCCATGTTTTTTTTTGCACCGCCCCCTGAAACAAAAGCTGTG
TCTGTGAGCTCTGGGAGAAGCCATCATTAAAAAGAAAGGGATTGAGCGAC
CGTCAGCTTAGATCACAGGGAATTGTGATGCTTGTCAACTGAAACAACAG
GCATTTTCTGAAGGACTCAGATTTATTACCTGTGAAGATGCATTTTCTTC
AAGAATCTTTTCAAGGAGATTTCTCATGTAAGGTTCAGCTCAGTGACCTG
TTTATCCTGGAGCCTCCCTGGCTTTATCCCTGTAGCTAGTCTGTGGCTTT
TTTCTTCATATGATAGGTAAAGAGGGATTCCAGCCAGGCATATTCCAGGG
TCTGTATAAAGGGAGGAGAGAGACTGTATAAATGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_e04.g1 MSMg01no159_e04.g1 CHROMAT_FILE:
MSMg01no159_e04.g1 PHD_FILE: MSMg01no159_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:57 2005
         (293 letters)



>mm_chr4_121254207_121254899
          Length = 693

 Score =  445 bits (230), Expect = e-129
 Identities = 266/278 (95%), Gaps = 3/278 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaattggacctagaacttgtaacaagttgggtagcagaatgtgcctgctttacactgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 315 agaattggacctagaacttgtaacaagttgggtagcagaatgtgcctactttacactgtt 256

                                                                       
Query: 61  tataattgttctaagcccattgtggtagttagtgtctgaacagagctagtttagggaagt 120
           |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 255 tataattgttctaagcccattgtggtagttagtgcctgaatagagctagtttaggaaagt 196

                                                                       
Query: 121 aattccccagaactcatgaggaagaggcaggaggatctctgtgaa-ttgaggcctgcctg 179
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 195 aattccccagcactcatgaggaagaggcaggaggatctctgtgaatttgaggcctgcctg 136

                                                                       
Query: 180 atctacgcttcgagttccaggtaagctaaagctacatgagaagaccatgtcatgtaagtt 239
           |||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 135 atctacacttccagttccaggtaagctaaagctacatgaggagaccatgtcatgtaagtt 76

                                                 
Query: 240 aaaattaaaatta-aatgtaagtattgttctatttgtg 276
           |||||||||| || ||||||||||||||| ||||||||
Sbjct: 75  aaaattaaaa-tataatgtaagtattgttatatttgtg 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)