BAC Information

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BAC

Clone NameMSMg01-159F09
Chromosome4 (Build37)
Map Location 11,538,747 - 11,539,098
singlet/doubletsinglet
Overlap geneE130016E03Rik
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847
Downstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159F09.T7 (MSMg01no159_f09.b1)MSMg01-159F09.TJ (MSMg01no159_f09.g1)
ACCAG359303AG359304
length732727
length of high quality
(start - end)
352 (381 - 732)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no159_f09.b1 PHD_FILE: MSMg01no159_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:03 2005CHROMAT_FILE: MSMg01no159_f09.g1 PHD_FILE: MSMg01no159_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGATTTCACTGCCAGCAAGATGCTGAGAGGTAAGAGCAGCAGCC
TGACAGGCCAGTCTGAGGCCTACAACCTACGTTGTAAGAGAGCCAGCTCC
TACATAGGTCCTACAGGAGGTCCTCTGACCTCCACAGACATGCCATGGCA
CACAGTGGCGTATACACACACACACAATGTGCCCTCTTTACATCCTTGCC
CTGGGTTCAGAGAGGAAGACTAGCACTCATAGAGGCATGTGAAGGAGCAC
AGCAGTGCCATGCAACAGTGAGATGGGTATCTTGATAAAACATGAAGGCA
AATTTAGACAGTCTTGAAGCACACCACAGCCTGGGCATGCAAGGTCCCAG
CAGCCAATAGTTCACCCTTGAAAATCCCTTACGCTGTCTGCAATCACTGT
AGGCTCCCTCTAGTTTAAGGATTAAAGTGATCCTGGGCAGCACAGGGTTG
GTATTTATACCTTGCCCACTCTCCCAGAACAGCTGCCTCCAATGCCCCTA
ATCCGTGAAGCCTGTTACTACCTCCCCCTCTTACTGAAAATGTGTGCATG
TAGCTTTCTCTTATCCCTACCTTACCAAAATGGAAAACCCCACCAGGCAC
AGAATAATGCCAGCACTCTTGGCCATCAATTTCTATCACACAAACTACCC
ACTGATCTAAAGCTCACGGAAGAAAATCCCCG
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAGTATATAGACACACTTTTTTGC
TTTTATTTTTGCTTTTTTGAGCCAGGTGTTTGTTGTTGTTTTGTTTGGGT
CTTTTTGTTGTTTTTTTGAGACAGAGTTTCTCTGTATAGCTTTGGCTGTC
CTGGAACCTGCTCTGTACATCAGGATGTTCTTGAACTCACAGAGATCCAC
CTGTCTCAGAGATCTTAAATGCTGGAATTAAAGATGTGTGTGCTACTACC
ACTGGGATATATATGGATATGTTTTTATGCATTTATATATATAACTACAT
ATATATGTAGATGGCCCTAACCCANANCCTACATTAATATATAATTTATA
ATACAATTTANTCCCCAAAAAAANCAAAAAATAAATACGTTGGCGTGTAA
TAATTAGTATGTTAATCTAGGAAAGATAAGCCTCAGTTGTTCAGAGGAAG
GAGCACCTCTGGAAGTCATGGAGTCGGAGGAACACACATAACCAAACTTA
AAGGAGTTTAATGTACATTCAGTATATAGAACTCCATAAATATTGTAAGA
AATAGCTGAGAAAATCTACATAACTGCATGATTATTCCACACTTGACAAC
TTACCCTAATTGGGTTCAAGTCACCTCCTATTAATATTACCTCTTTACTA
CTTATTATCAACAAATCTCCTCCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_f09.b1 MSMg01no159_f09.b1 CHROMAT_FILE:
MSMg01no159_f09.b1 PHD_FILE: MSMg01no159_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:03 2005
         (352 letters)



>mm_chr4_11538547_11539298
          Length = 752

 Score =  634 bits (328), Expect = 0.0
 Identities = 346/352 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggcatgcaaggtcccagcagccaatagttcacccttgaaaatcccttacgctgtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgggcatgcaaggtcccagcagccaatagttcacccttgaaaatcccttacgctgtctg 493

                                                                       
Query: 61  caatcactgtaggctccctctagtttaaggattaaagtgatcctgggcagcacagggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 caatcactgtaggctccctctagtttaaggattaaagtgatcctgggcagcacagggttg 433

                                                                       
Query: 121 gtatttataccttgcccactctcccagaacagctgcctccaatgcccctaatccgtgaag 180
           |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct: 432 gtatttataccttgcccactctcccagaacggctgcttccaatgcccttaatccgtgaag 373

                                                                       
Query: 181 cctgttactacctccccctcttactgaaaatgtgtgcatgtagctttctcttatccctac 240
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 372 cctgttactacctccccctcttactgacaatgtgtgcatgtagctttcccttatccctac 313

                                                                       
Query: 241 cttaccaaaatggaaaaccccaccaggcacagaataatgccagcactcttggccatcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cttaccaaaatggaaaaccccaccaggcacagaataatgccagcactcttggccatcaat 253

                                                               
Query: 301 ttctatcacacaaactacccactgatctaaagctcacggaagaaaatccccg 352
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 252 ttctatcacacaaactacccactgatctaaagctcacagaagaaaatccccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)