Query= MSMg01no159_p09.b1 MSMg01no159_p09.b1 CHROMAT_FILE:
MSMg01no159_p09.b1 PHD_FILE: MSMg01no159_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:47 2005
(278 letters)
>mm_chr4_86065341_86066017
Length = 677
Score = 514 bits (266), Expect = e-150
Identities = 275/278 (98%), Gaps = 1/278 (0%)
Strand = Plus / Plus
Query: 1 gaacagcccccagcattctgagaaattatctgtccttgggcaagtaagcttacaggttag 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 gaacagcccccagcattctgagaaattatctgttcttgggcaagtaagcttacaggttag 260
Query: 61 agcatttctgctttttatatctcttaaacacagtaatttaaatttaaaacataatgttag 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 agcatttctgctttttatatctcttaaacacagtaatttaaacttaaaacataatgttag 320
Query: 121 cagctatcacaaaagtcaacagagtggtcctcatttgactagaatctgcagatggagtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctatcacaaaagtcaacagagtggtcctcatttgactagaatctgcagatggagtct 380
Query: 181 cctttagatataatggaggcattatattaactttattcactaagaagaaatattctttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttagatataatggaggcattatattaactttattcactaagaagaaatattctttta 440
Query: 241 gttttaaaaggagacaaacacaaacaagattctagggg 278
||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gttttaaaaggagacaaacacaa-caagattctagggg 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 677
Length adjustment: 9
Effective length of query: 269
Effective length of database: 668
Effective search space: 179692
Effective search space used: 179692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no159_p09.g1 MSMg01no159_p09.g1 CHROMAT_FILE:
MSMg01no159_p09.g1 PHD_FILE: MSMg01no159_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:47 2005
(290 letters)
>mm_chr4_86227286_86227979
Length = 694
Score = 534 bits (276), Expect = e-156
Identities = 285/290 (98%), Gaps = 4/290 (1%)
Strand = Plus / Minus
Query: 1 ttttgtcagcatcaaaggagttcagaatgtacttggcttcttataagtgtttaggtc--- 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttttgtcagcatcaaaggagttcagaatgtacttggcttcttataagtgtttaggtcttt 431
Query: 58 -tttttttttttggtaaatgttatgagtttgaaatatgaagtatttaagaacagaaaatg 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttttttttttttggtaaatgttatgagtttgaaatatgaagtatttaagaacagaaaatg 371
Query: 117 tcaaattttagaaaacaattttgattcctagaataatcttataagtgaatgacaaatatc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcaaattttagaaaacaattttgattcctagaataatcttataagtgaatgacaaatatc 311
Query: 177 atagttatattaaaaatatctgtcgttaacatgagttagtgcctaacctaatggccactg 236
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atagttatgttaaaaatatctgtcgttaacatgagttagtgcctaacctaatggccactg 251
Query: 237 aataactgcatctttcattttagagaaataaaccattttattggatctta 286
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aataactgcatctttcattttagagaaataaaccattttattggatctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 694
Length adjustment: 9
Effective length of query: 281
Effective length of database: 685
Effective search space: 192485
Effective search space used: 192485
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
