BAC Information

Click to search

BAC

Clone NameMSMg01-161L07
Chromosome4 (Build37)
Map Location 32,047,822 - 32,048,177
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040891
Downstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161L07.T7 (MSMg01no161_l07.b1)MSMg01-161L07.TJ (MSMg01no161_l07.g1)
ACCAG361041AG361042
length1,2681,262
length of high quality
(start - end)
359 (43 - 401)304 (506 - 809)
definitionCHROMAT_FILE: MSMg01no161_l07.b1 PHD_FILE: MSMg01no161_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:37 2005CHROMAT_FILE: MSMg01no161_l07.g1 PHD_FILE: MSMg01no161_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCCTTATGCAAATGAGGCACCTCCTGCACCCTGGCCCTGGCCAAGGA
TGTACACTCACCCCAAAGGTTTAAATTTAACAAGCCTTTGTCCCTCCCAT
TAAAAGACCTTCCTCCCTGAAGCCCAGAGTCTATTTTCTTCACACTGGTT
GTGACCACAAGAGTCAGGTCCCTATGAGTAGGGAAACGGTGAATATTGAA
GCGGGACTGAGAACAACAATCTGCCACAGACACTAGGTCCTAGTGACCAG
GAGATTCTGTTGTCACAGAAATACTTACCTGCTGACTGGCTTGCACTTGA
AAGTGGAGTCTGGCTTAGGTTGGTAAGTGGTTGAAGAAGATGCGTAGGGA
TGATTTGGGATGAACAGTTTGGGGAGCTCGCATATGGGGATGTGTAAGTC
CTTTTTTTTTCCCCCCCCCCCAGGAGGAGGACTATGCTTAAAAAAGAGGG
TGGCTCAGACTACCATATTCTGGTGAAGTCACTGTTATTAAGGTAGGATG
GAATACATGTAATATATTTCTTTGAACACTTAGTTATCTTGATTTGGAAT
ATGTATTTAGACATTTAGTATATTGGCCTCTGCTTGTACTCTGGGGCCCT
CAAATGTTAGGTCTGTTTTTTGTGCATCGTGAATGTCATTGTCCTTTTCT
CCATCCTTTTTCTTCTCTTCCTTTCTCTTCTATTTTTCTTTTTTTTCTAT
TTCTTATTTTCTTTTCCTCCTTTCCTTTTTTTTATACTTCTTATTTATCC
TTTTCTTTTTACTTTTCTTTTTTTTTCTTATTTTCTTCTCTTCTACTTCT
TATTCTATCTCTCTTTTAATATCTATTTATCTTCTACTTTTTATCTTTTT
TCTCTTTTAATTTTTCTTTTCTTTATTTATTATTCTTTTTTTTATTTTTA
CTTGTTTTCTTTTTTTTTCTATATCTTTTCTTTTTTTTACTTTTTCTTTA
TCTATATCTTTCTTATTTTTTTTTTAATTTAATTTATCATCCACCTTATC
CCCTTCTTATTATTTCTCCTTTCTTATCTTTTCTTGTATTTTTTTATTAG
TCCTCATTTTCTGATTCTTATCTCTTTTCTTATTCTCTTCTTATTTTTAT
CTCCTTCTTTTACTTTATTCTGTCTTCTTATGTCTCTCTACTATTTCTCT
TTGTTCATTTATTCCTTCTTCTATTCCTTTCTTTTTCTCCTAATCTCATA
TCTTTACTTACTTTTTCT
NNNCCAACAATGGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGCTCCTCCTGTGCCATGCCTGCAGG
GATACTGCCATGCTCCCACCTTGATGATAATGGACGGAACTTCTGACTGA
ACCTGTAAGCCAGCCCCAATTAAATGCTGTTTTTATAAGACTTGCCTTGG
TCATGGTGTCTGTTCACAGCAGTAAAACTCTAACTAATACAGGGAGTTAA
ATAGGAAGGGATGGACGAGAAAGGTCGAGGAGGCAGTGCATAGAGAGACA
ACTAACAAAACACGCTGCTGTAGAACCTTCCTAAAATATATGACTATGCA
AAAAGAATCAAAACGGAGTTACCAAATAGGTGAAAGAATGCTCCAACCAG
ACTTGTTGTACCACAAGTAAAACCTCCAGTGCCAGGAAAGAGTTAAGCCT
TATATTGTTTTTCCCCCCCCCCCCCCCATGAAAACTCCATAATATAAAAA
AGTATTGCAAAGGCTATTTGCTATTCTCCGCGACCTGATGCTCTACTACT
GAAGACAACATTAACACATGCTATCAAACATGGAAAATTGAGCTAGCACC
CTACTAGAAGCTTCACCCGATTAACTAGTGTTCAAGGTACTCAAAGGTAC
TTCTCACGCTACAAGAAAAAAAAAAAGATAATCATTGGTATTTCCCAGGT
ATGATATCTGTAGATCACTATGATCTACCTCAGTGATCTGCCTGCAAGAC
ATACTGGTACTACAGTGCCACAAATGCAGTGGGAGTAACAACCCACTTTC
TGATTGGATTTAAGTCTGGATCCCCGAGATAGAATCCATATCTAAACCTG
CTAGTTGCCAAGAACCTGAGACTAGATAAGTCTTGGGTAACCTAATATTA
TTATACTAAAGGGCCTTATTATTGTAGGAACTCATGAGGACATACATATA
CCCCCAAATAAATGCCTTGTTCCCTCTCCTCAAAAAAAATCCTTTTTTGG
TAGATGGGAATTTACACATTTTTCCCACTTGTACATGTTTTAAAAAAAAA
AATGGGGAAAATTCCCCCTAAAAATACTTTTTTCCGTTAAGGAATTTTAA
AAAATGTGGCGGAAGGATTTAAATTCCTATTTATTACTTTCTCTTATTAA
TTTTTTTTTATCTAACTGTCTTCTCTTCTCTTTCTTCATATCATTTATCT
CTATTCTTTTCTTATTAACTATTTTCCGTATTCTTCTTCTATTCCTTTTT
CTTCCTTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_l07.b1 MSMg01no161_l07.b1 CHROMAT_FILE:
MSMg01no161_l07.b1 PHD_FILE: MSMg01no161_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:37 2005
         (359 letters)



>mm_chr4_32047619_32048377
          Length = 759

 Score =  681 bits (352), Expect = 0.0
 Identities = 355/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttccttatgcaaatgaggcacctcctgcaccctggccctggccaaggatgtac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggaattcttccttatgcaaatgaggcacctcctgcaccctggccctggccaaggatgtac 500

                                                                       
Query: 64  actcaccccaaaggtttaaatttaacaagcctttgtccctcccattaaaagaccttcctc 123
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 499 actcaccccaaaggtttaaatttaaaaagcctttgtccctcccattaaaagaccttcctc 440

                                                                       
Query: 124 cctgaagcccagagtctattttcttcacactggttgtgaccacaagagtcaggtccctat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cctgaagcccagagtctattttcttcacactggttgtgaccacaagagtcaggtccctat 380

                                                                       
Query: 184 gagtagggaaacggtgaatattgaagcgggactgagaacaacaatctgccacagacacta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagtagggaaacggtgaatattgaagcgggactgagaacaacaatctgccacagacacta 320

                                                                       
Query: 244 ggtcctagtgaccaggagattctgttgtcacagaaatacttacctgctgactggcttgca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggtcctagtgaccaggagattctgttgtcacagaaatacttacctgctgactggcttgca 260

                                                                   
Query: 304 cttgaaagtggagtctggcttaggttggtaagtggttgaagaagatgcgtagggat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttgaaagtggagtctggcttaggttggtaagtggttgaagaagatgcgtagggat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)