BAC Information

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BAC

Clone NameMSMg01-161L12
Chromosome4 (Build37)
Map Location 109,437,599 - 109,575,218
singlet/doubletdoublet
Overlap geneFaf1
Upstream gene3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307
Downstream geneDmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161L12.T7 (MSMg01no161_l12.b1)MSMg01-161L12.TJ (MSMg01no161_l12.g1)
ACCAG361050AG361051
length1,2711,278
length of high quality
(start - end)
418 (44 - 461)384 (471 - 854)
definitionCHROMAT_FILE: MSMg01no161_l12.b1 PHD_FILE: MSMg01no161_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:39 2005CHROMAT_FILE: MSMg01no161_l12.g1 PHD_FILE: MSMg01no161_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,574,817 - 109,575,218)(109,437,599 - 109,437,982)
sequence
NNCCCCTCATTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGCCACCAGGTCTAGTGAGACTGTCTCAAAAAAGAGAGCAAAGTT
TGTAGAAGTAAAGCTAAAAGGAAAAACTGTCCCGTAAGGCTACCGAGTGT
CTTGTTTGACTTGTTTACCACACATATTCTTAGGTTTTGATAAATTCACA
TCTTCTTTTTATTTTTTCTCATTTTCCCAAAATTCAATCTTCTCTCAGTT
TACCCATGCTGTGCCTGTTCTTGAAATGAATCAAATGTGCCTCTTTAGAC
AATTTCCCCCTGACTACAATGATTACTTATTTATTTGCTTGTTTGGTTTT
TGAAACAGGCTTGTTTGTTTTGTGGCTCAGGCTGCCTACAAGTTCAGGAT
TCTTCTGCCCTGCTTCCTGGGTGCTGGGATTACAGGCATTTCTGCCCCTA
TTTTTTTTCCCCCCCCCCCCGGNCATACAGTGCCCTACAAAATAAAAGGG
GGATAGGAATATCCCCAAAATAAAATAAAATAAAGTAAAGTAAAATAAAA
TGTTCGGGTAAGTGTACAATATTTAAGAAAAGAACAAATTTTGTAATCTT
TTTAATTGATATATGGATGAGAGAAAATGTTTTCATTAACATTTCCCTAA
AGTGTCAATCAGGCTTGACATTGTGAATAATGAAAGAGCTTGAATTTTAA
GACAATGTTGTACAAGACTGTCCAAGTGGTTAAGAGCCCACACAACCTCA
TGTACCTTCAACTCCAGGAGCTACAATGCCTCTCTGGCCTTCATCAGCAC
CTGGACTCACATGTATGCAGGGCCATACTCATACACACCATTTAAAATTA
AAAAATTAAATCTTAAAAAACTAAAACAAAACCCCAAACCACCCCCCAAC
CCCCCAAAAAATTTATCCGGCTTATGGTGGCCCATGCCTTTTATCCCCAC
CACTTGTCAATTCAAAGTCTGTGGAATTTCTGAATTCAGGTCCTGCCTGT
TTTTTAAATGTGTATTTCCTGAAAATCCCATTTTATTATAAAAAACCCCG
TTTCTCAAAATCTTATCCTTTCCTTTTCTAATATTTCTTACTTACTATTT
AAATGTCTTTTTTTTTTGCGTATTTAATTCCTCTTCATTGCTCTCTCTTC
CGGTCCTTTTCTTCTCTCTCTATAAAGGTGTTTCATTTTTTTTCTTCCTA
CCTCTCTAATTAAAAAAACAATCTCTTCCTCCTCCTCCTTTATATACCAC
GTCTCTACTTTAAATCTGCTC
NNNNTTGACATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTTTATAAACATTCCACCAACAAATATCC
AGTGAAATTTGCCTATAATAAGGTGTTAATGAATTGGTATCCTTGGGGAG
AAAATATTTCAAGAAAAAAATAGAATAGGAAAAAAGCGAACAAAATTAAA
ATAAATGAAATGTAACTGCATTTTTTTTTAAATTGTAGAGAGTGAAGAAC
TGGTGTTAGAACCAGAACCTCAGTTAGTAGAAGTTGTTTGATCATGACTG
TATAGTCATTTGCTTAGCTGGAGCCTCTTCTCTGACTTAACAGAGTCAGT
GCTTGAATAAATAAATAAACGAATAATTTATTTCAGTATTAAACTATTAT
CCCTATGTCCCCAAATGTCACATACACGATTACTAAGGTTGGGTACGGCT
GCAAATTTTTTCATGCCCCTCTGTAGCACCATATTATCTTTTAAAAATTA
AGTATTCTCCAGCCATCTAGTAAGTAATATCCCATTCATTGGTCTTCCTT
TTGCAAAAACAAAGAACCAAATAAACAACAAGCAAGGATTAAAGGATTGG
TAAATGAATATAAAATGTTCATAAACACAGTGGATTAAGTCAATGTATAT
TAAGGTAATTCTAATTATAGAAAATAATTTTCATATTTATCATTCTAAGC
CAAAAATTATTTGGACCCAACCTCCTAAAATATCAAGCTATGGTATTTTT
CTTTCATCTAATATGGCATAGCACTGTGTAGTCAAAGAATTATCTTTTTG
AAACATTATCCTTTTGGTGAATGTACTTTGACGAAAATTCTGTTACTTAG
TTTGTAGTTTTATTACCCTCAATATAACCGATCTCTTCCTTCTTCTTCTT
CTTCTTCTTTTTTTTTTTAAGAAAAAAAATAAAGGACTTTTAAAGCTTCC
AGCAAAAAGTGTATAATTGACAAATGGATTCCCTGTCTTTGGGGGCCATT
GCGGGACCCAACGGAATAAAACTGGATTTTTTCTGAAGTTTTATCGCTGG
CAGGAGAAAACACCTGTTCTTTGTAAAACCCCCTTTGTTTAATTCTGAAA
TGAAATTTCCCTTGCACTTTGGACACAACGCGGGTATAAAGTCCCCCGCC
AAAAAATTGTTTTATATTTCTCCCAATAGCGACTGTCCCCTTATTGGGCC
TTTTCTTTTTCTCAAAAGTCGCGAGGGGGTGCACTCAATCTCTTCTTCGT
TCTTGTCCATTCCAGACACCTCATGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_l12.b1 MSMg01no161_l12.b1 CHROMAT_FILE:
MSMg01no161_l12.b1 PHD_FILE: MSMg01no161_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:39 2005
         (418 letters)



>mm_chr4_109574684_109575501
          Length = 818

 Score =  739 bits (382), Expect = 0.0
 Identities = 397/402 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccaggccaccaggtctagtgagactgtctcaaaaaagagagcaaagtttgtagaag 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aattccaggccaccaggtctagtgagactgtctcaaaaaagagagcaaagtttgtagaag 476

                                                                       
Query: 66  taaagctaaaaggaaaaactgtcccgtaaggctaccgagtgtcttgtttgacttgtttac 125
           |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct: 475 taaagctaaaaggaaaaactgtacagtgaggctaccgagtgtcttgtttgacttgtttac 416

                                                                       
Query: 126 cacacatattcttaggttttgataaattcacatcttctttttattttttctcattttccc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cacacatattcttaggttttgataaattcacatcttctttttattttttctcattttccc 356

                                                                       
Query: 186 aaaattcaatcttctctcagtttacccatgctgtgcctgttcttgaaatgaatcaaatgt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aaaattcaatcttctctcagtttacccatgctgtgcctgttcttgaaatgaatcaaatgt 296

                                                                       
Query: 246 gcctctttagacaatttccccctgactacaatgattacttatttatttgcttgtttggtt 305
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 295 gcctctttagacaatttcctcctgactacaatgattatttatttatttgcttgtttggtt 236

                                                                       
Query: 306 tttgaaacaggcttgtttgttttgtggctcaggctgcctacaagttcaggattcttctgc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tttgaaacaggcttgtttgttttgtggctcaggctgcctacaagttcaggattcttctgc 176

                                                     
Query: 366 cctgcttcctgggtgctgggattacaggcatttctgccccta 407
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 cctgcttcctgggtgctgggattacaggcatttctgccccta 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no161_l12.g1 MSMg01no161_l12.g1 CHROMAT_FILE:
MSMg01no161_l12.g1 PHD_FILE: MSMg01no161_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:39 2005
         (384 letters)



>mm_chr4_109437399_109438182
          Length = 784

 Score =  727 bits (376), Expect = 0.0
 Identities = 382/384 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtagcaccatattatcttttaaaaattaagtattctccagccatctagtaagtaatat 60
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtagcaccatattatcttttaacatttaagtattctccagccatctagtaagtaatat 260

                                                                       
Query: 61  cccattcattggtcttccttttgcaaaaacaaagaaccaaataaacaacaagcaaggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccattcattggtcttccttttgcaaaaacaaagaaccaaataaacaacaagcaaggatt 320

                                                                       
Query: 121 aaaggattggtaaatgaatataaaatgttcataaacacagtggattaagtcaatgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggattggtaaatgaatataaaatgttcataaacacagtggattaagtcaatgtatat 380

                                                                       
Query: 181 taaggtaattctaattatagaaaataattttcatatttatcattctaagccaaaaattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaggtaattctaattatagaaaataattttcatatttatcattctaagccaaaaattat 440

                                                                       
Query: 241 ttggacccaacctcctaaaatatcaagctatggtatttttctttcatctaatatggcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggacccaacctcctaaaatatcaagctatggtatttttctttcatctaatatggcata 500

                                                                       
Query: 301 gcactgtgtagtcaaagaattatctttttgaaacattatccttttggtgaatgtactttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcactgtgtagtcaaagaattatctttttgaaacattatccttttggtgaatgtactttg 560

                                   
Query: 361 acgaaaattctgttacttagtttg 384
           ||||||||||||||||||||||||
Sbjct: 561 acgaaaattctgttacttagtttg 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)