Query= MSMg01no162_f19.b1 MSMg01no162_f19.b1 CHROMAT_FILE:
MSMg01no162_f19.b1 PHD_FILE: MSMg01no162_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:43 2005
(259 letters)
>mm_chr4_19934642_19935301
Length = 660
Score = 472 bits (244), Expect = e-137
Identities = 256/260 (98%), Gaps = 1/260 (0%)
Strand = Plus / Plus
Query: 1 gataattttaatggaaatgaaggaaaaa-tacttccgtgtgttcattcagatttcgcggt 59
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gataattttaatggaaatgaaggaaaaaatacttccgtgtgttcattcagatttcgcggt 260
Query: 60 catctctgtgtattcttcaccagacatccttcagattccttaagtaagggttttgattga 119
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 catctctgtgtattcttcagcagacatccttcaggttccttaagtaagggttttgattga 320
Query: 120 gagactggtggcatctaaacacatacatcgttagtgtttaaaatgtgacctcccccaccc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagactggtggcatctaaacacatacatcgttagtgtttaaaatgtgacctcccccaccc 380
Query: 180 gctctcctttctctagtagagccagatgccaagatctggaaagcattttcctggaaagaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gctctcctttctctagtagagccagatgccaagatctggaaagcattttcctggagagaa 440
Query: 240 gcaaggaggaggaggagact 259
||||||||||||||||||||
Sbjct: 441 gcaaggaggaggaggagact 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 660
Length adjustment: 9
Effective length of query: 250
Effective length of database: 651
Effective search space: 162750
Effective search space used: 162750
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no162_f19.g1 MSMg01no162_f19.g1 CHROMAT_FILE:
MSMg01no162_f19.g1 PHD_FILE: MSMg01no162_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:43 2005
(286 letters)
>mm_chr4_20069565_20070248
Length = 684
Score = 480 bits (248), Expect = e-140
Identities = 273/282 (96%), Gaps = 3/282 (1%)
Strand = Plus / Minus
Query: 1 accctcgacaccctgaaggttcctggcaagctgtggctggttactgccttctaccgatgc 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 379 accctcgacaccctgaaggttcctggcaagctgtggctggatactgccttctaccgctgc 320
Query: 61 ctgcatctctgccacactcactcttacggagtttgctgttgtgactacagatttcacagg 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 319 ctgcatctctgccacactcactcttacg--gtttgctgttgtgactacagatttcacagg 262
Query: 121 atgtcaccattacaacttccagagtcccttcagctatcaatttcaattatactaatggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtcaccattacaacttccagagtcccttcagctatcaatttcaattatactaatggta 202
Query: 181 agccagtggaatggattagcaggtaaagcactcactgccaagaatattgagaaggggtgg 240
|||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct: 201 agccagtggaatggattagcaggtaaagcactcattgccaagaatattgaggagaggtg- 143
Query: 241 agtcccataatccacatggtagaaggaaagaagcaactccgg 282
||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 142 agtcccagaatccacatggtagaaggaaagaagcaactccgg 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 684
Length adjustment: 9
Effective length of query: 277
Effective length of database: 675
Effective search space: 186975
Effective search space used: 186975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
