BAC Information

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BAC

Clone NameMSMg01-162J14
Chromosome4 (Build37)
Map Location 78,719,042 - 78,719,333
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996, LOC100040026
Downstream geneLOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162J14.T7 (MSMg01no162_j14.b1)MSMg01-162J14.TJ (MSMg01no162_j14.g1)
ACCAG361678AG361679
length725729
length of high quality
(start - end)
276 (42 - 317)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no162_j14.b1 PHD_FILE: MSMg01no162_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:00 2005CHROMAT_FILE: MSMg01no162_j14.g1 PHD_FILE: MSMg01no162_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAACTGAGAATACCAAATGGCCTAGAAGCACCTAAAAAAACAACAACA
AAAAAATGTTTATCATCCTTAGTCATCATGGAAATGCAATCAAAACAACC
ATGAGATTCTACTTCACACAAATCATAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGTGAGGATGTGGAGAGAGAAGAACAGTCCTCCATT
GCTGGTGGGATTGCAAGCTGATACAATCACTCTGGAAATCAATTTGGCAG
TTCCTCAGACATTTCGACATATTATTTCCAATTTTCTAAGGAACCTGATG
ACTTCCAAAGTTGTTGTTCTCCCCCCGCCCCCCCTTAGCAACGGAGGAGT
GTTCCTCTTTCTCCACAACCCCGCTTGCTAGAATTGATGCTTCAGTCATT
ATGATTTGAATGTCCCTGATGATTAACTATGTTGAACATTTCTTTAAGTG
CTCCTCAACCATTTGAAATTCCTCTGTCGAGAATTATGTTTAGCACTGTA
ACCCATTTTTCAATTGCCTCATTTGGCATTTTAAAGCCTAACTTCTTAAG
TTCTCTGAATATTTTTGATGTTAACTCCCTGTTGTAAATAGGGAAGTTGA
AGATCCTTTCCACCCCCGTAACTTGCCGCTTTAGCTTAGAATATCACTTG
TCATATTATTTGATTTAAATAAATC
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAATTTCATTGCTACCATTGGCCAAGA
GAAGGAATGAAAATAATTCCAGAGTCTGAACATGAAAAGAGGAAAAACAA
ACAACCAAACCAAAACAAAACAAACAAGCAAGCAACGTGACAGTTTTGGG
TGACATGGGAAATTAATCAGTGTTCCATGTATTCTCAAAGCCATTGTCAT
ACCTGACACAATGAGACCATAGTCCTTTAACCATGTAATTCCATCGAGGA
TTGCTCATATTCCACTCATCTTGTTCTACGCAACTTTCCAATGTTGTCAA
CTACTCTGGTGAATTTTTATTCTAGTCCCCCCCCACTAGTGAATAAAACA
TGTACCTGAAAATGTCAGAACCACCCACAACATCCACCTAGTATCAGCTA
AATTAAAGAACTCAGAATTTCAATATTCTAAATAAGAACACTAGCATAAT
ATTGGAGAGTACTTCAAAGAAAGTAACACCTGCTCTGGGTCATTACTGTT
AGGAGGCTAGGAAGGCCTTAAAATGTCTAGAGTAAAACAGAACTGGAACC
ATCCATCACACTCAGAGGCTCTGACACAGTATATCTCTCTGCACAAAGGG
AAAAAAAACACATTTGTTATTGAGACCCTAAATGTCCATTGATAGTCTAT
TAAATATAAAACCTTCTGTTTTCTATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_j14.g1 MSMg01no162_j14.g1 CHROMAT_FILE:
MSMg01no162_j14.g1 PHD_FILE: MSMg01no162_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:00 2005
         (292 letters)



>mm_chr4_78718729_78719420
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatttcattgctaccattggccaagagaaggaatgaaaataattccagagtctgaaca 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 caaatctcattgctaccattggccaagagaaggaatgaaaataattccagagtctgaaca 546

                                                                       
Query: 61  tgaaaagaggaaaaacaaacaaccaaaccaaaacaaaacaaacaagcaagcaacgtgaca 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 545 tgaaaagaggaaaaacaaacaaccaaaacaaaacaaaacaaacaagcaagcaacgtgaca 486

                                                                       
Query: 121 gttttgggtgacatgggaaattaatcagtgttccatgtattctcaaagccattgtcatac 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttttgggtgacatgggaaattaatcagtgttccatgtattctcaaagccattgtcatac 426

                                                                       
Query: 181 ctgacacaatgagaccatagtcctttaaccatgtaattccatcgaggattgctcatattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctgacacaatgagaccatagtcctttaaccatgtaattccatcgaggattgctcatattc 366

                                                               
Query: 241 cactcatcttgttctacgcaactttccaatgttgtcaactactctggtgaat 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cactcatcttgttctacgcaactttccaatgttgtcaactactctggtgaat 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)