Query= MSMg01no162_k10.b1 MSMg01no162_k10.b1 CHROMAT_FILE:
MSMg01no162_k10.b1 PHD_FILE: MSMg01no162_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:04 2005
(263 letters)
>mm_chr4_21575478_21576139
Length = 662
Score = 485 bits (251), Expect = e-142
Identities = 257/259 (99%), Gaps = 1/259 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtcttttacctgtaggctttaaaatgagttcgtgagcattgtatgccctcacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcttttacctgtaggctttaaaatgagttcgtgagcattgtatgccctcacc 264
Query: 65 ttttatctgctgtcaattaacatgagcatttttagtatgcagagagaaaaaaaaaaagca 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 ttttatctgctgtcaattaacatgagcatttttagtatgcagagagaaaaaaaaaa-gca 323
Query: 125 tgatgtttagaatgtcacttccactgcctgatgctccaacacgtgtgacaaactgacatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgatgtttagaatgtcacttccactgcctgatgctccaacacgtgtgacaaactgacatc 383
Query: 185 tccgtaaagctattaggagcgtctctctttttgtctggcccttgtggtcttacactgtca 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccgtaaagctatttggagcgtctctctttttgtctggcccttgtggtcttacactgtca 443
Query: 245 tcctttgctcctgtgagac 263
|||||||||||||||||||
Sbjct: 444 tcctttgctcctgtgagac 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 662
Length adjustment: 9
Effective length of query: 254
Effective length of database: 653
Effective search space: 165862
Effective search space used: 165862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no162_k10.g1 MSMg01no162_k10.g1 CHROMAT_FILE:
MSMg01no162_k10.g1 PHD_FILE: MSMg01no162_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:04 2005
(281 letters)
>mm_chr4_21724413_21725093
Length = 681
Score = 543 bits (281), Expect = e-159
Identities = 281/281 (100%)
Strand = Plus / Minus
Query: 1 aatccccaggagccacattggagagaaatgaatgcctcgagttgccctctgaccccaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aatccccaggagccacattggagagaaatgaatgcctcgagttgccctctgaccccaacc 547
Query: 61 tgcatcatgccatgcacacacatgtacacaccaaattaataaattgttaataaaaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tgcatcatgccatgcacacacatgtacacaccaaattaataaattgttaataaaaatatt 487
Query: 121 ttaaaccttcagatgttaaatatttcaatctaactttaaagaacaaaaacaaaaacctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttaaaccttcagatgttaaatatttcaatctaactttaaagaacaaaaacaaaaacctta 427
Query: 181 atctgagtacatattaccatttactacaaaacaagggtccataacattttgctcaataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atctgagtacatattaccatttactacaaaacaagggtccataacattttgctcaataaa 367
Query: 241 agtttgactctatttttttccagcatgtgcacataaaaatt 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agtttgactctatttttttccagcatgtgcacataaaaatt 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
