BAC Information

Click to search

BAC

Clone NameMSMg01-162L03
Chromosome4 (Build37)
Map Location 36,941,683 - 36,941,957
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132
Downstream geneLOC545600, LOC621458, LOC277771
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162L03.T7 (MSMg01no162_l03.b1)MSMg01-162L03.TJ (MSMg01no162_l03.g1)
ACCAG361740AG361741
length761714
length of high quality
(start - end)
34 (177 - 210)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no162_l03.b1 PHD_FILE: MSMg01no162_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:07 2005CHROMAT_FILE: MSMg01no162_l03.g1 PHD_FILE: MSMg01no162_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGCCCATACCTACACATGATAAAAGCACTCTACAGCAAACC
AGTAGCTAACATCAAAGTAAATGGTCGAGAAGCTGGAAGCAATACCACTC
AAACCAGGGTACTAGACAAGGGTGTCTACTCTCTCCCTACCTATACAACA
TTGTACTTGAAGTCCCAGCCAGAGGAATTAGACTACAAAAGGAGATCACG
GTGACACAAATGGTAACGGAAGAAGTCAAAATATCACTTTTTGCACATGA
TACGATAGTATATCTTAGTGACCCTAAAAATTCCACCATAGAACTCATAC
GCCTGATGAACCGCTTCTTTGAACTACCCCCCTCCACCACTAAGTCAAAT
AACTCAATGCTTTTTCTGTACTCTTACGCAAAACAGGCTCGACACAGTTC
TCACTGGAATATATACCCTTCTTAGTAATCGCAAATGCTCTGAACCTCCG
TGCCATGAATCTCCCCAAGGTCCGTGTACAGACCTTGTATGATATATACC
TTCGACGCCGCTCGATGAAACGATATTAACCAAAAATTTCCCCACCATTG
TATCGCCCTTCTCCTTGCTTCTGGGACCGATAACTTTCTCATAACCCGTA
AATTATTGGTTTCAACTTGGCCAAAAGGCAACTTTAATACAAATCCACAG
CTAACTCCTCCAATCCACCCTCTTTTAACCACAATGGCGTTCTAACCAAA
CCTTACTCACA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCATATAAGGAATACACACAC
ACACACACACACACACACACACACACACACACACACATTCTATTTGTGTG
CAGGTATCAAGCGAAGAGCTGCATTTCTTGCTCAGTCTCTAAAGTTCAGG
AACAAGTGGTGCAATGGTGAAATACAAGTACAAAAAGGAGAACATGGAAA
AGAGCCATGCCTAGTGTTAATTCTATGTGTGGCAGAATTGTACAATTTAC
CCCACCTATCACTTTCTTTCTTCCTCCTAGACTTTCTCTCTATTTCTATA
AGGTAAAATACATATTTATTTTTCGCCCCCCCCCCCTACAGCAATAAATA
TTTGTTTTGTGCTATATATTGTTCCAGAATATACTTTGTTATATTTTCAT
ACTTTGATATATACTTTCATACTTTGAAGTATGTAGATAAACACAAAGAG
GGGTCCAAAAGGTAGAAAAAACAAAATTCTCGGCTAGATTTGACATATGG
TGACTTTAAAAATGGTTTAACGAACTCACAGAAGGTATTCAGAATATTAC
TCTTTTCCAGCGCCACGGCCTAGGTAGGAACTCTTATGCACAGATATGGT
TATCCTGGGAGAAACTGAATCACTCTGGCCTATAACTGCCATTGTGCTTT
TCCGACAAAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_l03.g1 MSMg01no162_l03.g1 CHROMAT_FILE:
MSMg01no162_l03.g1 PHD_FILE: MSMg01no162_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:08 2005
         (285 letters)



>mm_chr4_36941422_36942106
          Length = 685

 Score =  493 bits (255), Expect = e-144
 Identities = 273/285 (95%), Gaps = 10/285 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcatataaggaatacacacacacacacacacacacacacacacacacacacacacac 60
           ||||||||||||||||          ||||||||||||||||| ||||||||||||||||
Sbjct: 536 atttcatataaggaat----------acacacacacacacacatacacacacacacacac 487

                                                                       
Query: 61  attctatttgtgtgcaggtatcaagcgaagagctgcatttcttgctcagtctctaaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 attctatttgtgtgcaggtatcaagcgaagagctgcatttcttgctcagtctctaaagtt 427

                                                                       
Query: 121 caggaacaagtggtgcaatggtgaaatacaagtacaaaaaggagaacatggaaaagagcc 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 426 caggaacaagtggtgcaatggtgaaatacaagtacaaaaaggggaacatggaaaagagcc 367

                                                                       
Query: 181 atgcctagtgttaattctatgtgtggcagaattgtacaatttaccccacctatcactttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgcctagtgttaattctatgtgtggcagaattgtacaatttaccccacctatcactttc 307

                                                        
Query: 241 tttcttcctcctagactttctctctatttctataaggtaaaatac 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttcttcctcctagactttctctctatttctataaggtaaaatac 262


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)