BAC Information

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BAC

Clone NameMSMg01-163A16
Chromosome4 (Build37)
Map Location 29,021,780 - 29,022,088
singlet/doubletsinglet
Overlap geneLOC100040907
Upstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
Downstream geneLOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163A16.T7 (MSMg01no163_a16.b1)MSMg01-163A16.TJ (MSMg01no163_a16.g1)
ACCAG361975AG361976
length719717
length of high quality
(start - end)
313 (47 - 359)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no163_a16.b1 PHD_FILE: MSMg01no163_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:33 2005CHROMAT_FILE: MSMg01no163_a16.g1 PHD_FILE: MSMg01no163_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGAGGGTTGGACCTGCATCCTTTCTGGACAGCACAGCAGAGCT
GACCTTGAAGGTGAGGGTGTAGGTATGCTGGCCCTGACACTTGTCTACCA
TGAGTTGCTGTGGGTCCATGGGTGAGAGAGTAGGAAAGCTGTCCTAGCCC
CTCAAAGGCCACAACACATGGAAGAGTGGGCAGACTGTCTTCACTAGGCA
GCATAGTGGAGCTAGCTCTGGAGGCCTGGCTTCCAATGAGCCAGCTCCAA
GGGCATGAGTACAGGAGGGCTAATCTTCTGCCAGTGGTGGCATTGAGTGG
CCTAGCTGATTATAGTTCGCCGNAGCAGNNTCTGGTTGTGTCAATAAGGG
AGAGCCAGCAGGCTGACCAGCTCAACTACACACCCAGGTCCAGATCCAGG
GCTCTGAGTTGGCCCACCCCAAAATCTATATCATCTGTGGATGGTTGGGG
TATGTGAAAGGGCCAGACCTGCTGATCCAAAGCTTCTGGATATCCATTAC
AAAAGGGAAAGAGGATAACTGGGAGGATGCCTGGTAAGGATCCAACATTG
ATGGTGCCACAGAAGCCACAGATGTTGAACCAGACCAATGACTCATTGCA
ATGAACGTTTGCAAGTGGAGACAGATGGACAGAGGGATAGACTGGGATAT
TCTGTGACACATTCCAGCT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAACCTTGTAACCCATTTT
TTCATAGGATTATTTGTTTTTCTGGGATCCAACTTCTTGAGTTCTTTATA
TATTTTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAGATCTTTT
CCCAATCTGTTAGTGACCTTTTCTTATTGGCAGTGTCCTTTGCCTTATAG
AAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGT
ACAAACCATTGCTGTTCTGTTCAGGAATTTTCCCCCTGTGCCCATATCCT
TGAGGCTCCTTTTTATTCTCTCCCTCACCCCTTTCAGTGCCTCTGGTTTT
ATGTGGAGTTCCTTGATTCACTTAGATTTGACCTTAGTACAAGGAAATAG
GAATGGATCTATTCGCATTCTTCTCATAAGATGGTCTCAGAAGATGGAAA
GATCTCCTATGCTCATGGATTGACAGTATTAATATAGTAAAAATGGCTAC
TGTACTGAAAGCAATCTACAGATTCATTGCAATCTTCATCTAAATTCCAA
CTCAATTCTTCAAAGAGTTATAAGGGAAAATTTGCAAGTTCATCTGGAAT
AACAGAAAACCTAGGGTAGCAAAAGACTATTTTCAACAATAAAAGAACCT
CTGGTGGAATCACCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_a16.b1 MSMg01no163_a16.b1 CHROMAT_FILE:
MSMg01no163_a16.b1 PHD_FILE: MSMg01no163_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:33 2005
         (313 letters)



>mm_chr4_29021773_29022485
          Length = 713

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggagggttggacctgcatcctttctggacagcacagcagagctgaccttgaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaattcaggagggttggacctgcatcctttctggacagcacagcagagctgaccttgaag 257

                                                                       
Query: 65  gtgagggtgtaggtatgctggccctgacacttgtctaccatgagttgctgtgggtccatg 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtgagggtgtaggtatactggccctgacacttgtctaccatgagttgctgtgggtccatg 197

                                                                       
Query: 125 ggtgagagagtaggaaagctgtcctagcccctcaaaggccacaacacatggaagagtggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggtgagagagtaggaaagctgtcctagcccctcaaaggccacaacacatggaagagtggg 137

                                                                       
Query: 185 cagactgtcttcactaggcagcatagtggagctagctctggaggcctggcttccaatgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cagactgtcttcactaggcagcatagtggagctagctctggaggcctggcttccaatgag 77

                                                                       
Query: 245 ccagctccaagggcatgagtacaggagggctaatcttctgccagtggtggcattgagtgg 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 76  ccagctccaagggcatgagtacaggagggctaaccttctgccagtggtggcattgagtgg 17

                    
Query: 305 cctagctga 313
           |||||||||
Sbjct: 16  cctagctga 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)