BAC Information

Click to search

BAC

Clone NameMSMg01-163P24
Chromosome4 (Build37)
Map Location 20,385,561 - 20,570,856
singlet/doubletdoublet
Overlap geneE130310K16Rik
Upstream geneCngb3, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163P24.T7 (MSMg01no163_p24.b1)MSMg01-163P24.TJ (MSMg01no163_p24.g1)
ACCAG362625AG362626
length745747
length of high quality
(start - end)
688 (46 - 733)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no163_p24.b1 PHD_FILE: MSMg01no163_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:43 2005CHROMAT_FILE: MSMg01no163_p24.g1 PHD_FILE: MSMg01no163_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,570,174 - 20,570,856)(20,385,561 - 20,385,844)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTGATCCCTGATCATGCTTCTTTTGAGGGCCTTGTTTTCTTTG
TCTCTTCCACTTCCTCTGGATCTTACATTCCTTCCATCTCTTCAACCACA
GGTTTCCCAAACCCTTAGAAGAGGGACATCCAGTTTAAGGCTTAGTTTTC
AAAGGTTATTATTCATTCTCTGCATAATGTCTGAGTGTGCATCTCTGTAC
TAAATACAGACTTTTGATACAGTTTGCTAAGGAGATTTTATTGTGTAAAT
TTATTAATATATAAAATATAAGTGTAAGTAATTTATAATTTTTACTATAC
CTAAGGTAGATAATGACATTGAAAAACTATTGTTTTAAGATCCACAGAAG
CCACATATTTCTGGCCCTCTCCAGAGGCTCAGGCCTTGCTCTCTGTCTGT
GCAAGATCAAGTGAAAAGTATGAAGGATGAGGAACAAAGTCTGAGGCTGC
AATATGGATCCTTTTCCTGGTCCCATGACTCTCTGGTGGTAGCATGTCTT
TCTAAGCTGTCAAGTATTATTTTATGATCTGCACCCATTTTTATCTTCAA
TTGGGTTTTATAATATATATGTATATATAAAATACAATATGTTGTATTAT
AATTATATAAATATAAGTATATATTATATAAATATAATTGTATAATACAT
ATTACTAACTATATCACCTTAGTTATTTTTGTATTGCATGGATGG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGAGGCCCCAGGCTGCTCAAGGGGA
CTATGTATGTGAGGATTTAACCGAAGACTCTCATGAGCAACCCTGTCAGC
TTATGTAAAATGACACTCAAAAAAGTACTATTATTGTCTTTAGGGAAAAA
GCAGTTTACATTTCTTTAAAAACTAAAATTCTAATAACCAAAAAAGTGAG
GTGGAACAAGTCAGTGAGAAACAATTGCATATAGGTTTTCTTCTGTGTGG
ATTACAATGAAGGGTGATGGGGCCATTAAGCCTGACACTCCGATATTGCA
CATGTGCTTTTTTTTATCCCCCCCCCCCCGGTCCCTTATCTCTAAAATGC
AGATAATTTCTACTCTGGAGGTAAGGACACAAACATAGCACCTGTATGAA
GCAGGCCATGATGAGTTAGTTCAATCCTGTTCTTGGAGCATTTTAGAAGG
CTTTTGATCCAAGCTCATAATTAAGATTGGATAAATTTTCATAGAATTGC
CCTTTTTTATGACTAAATTGATGTCCACAGAAAGTAATATGCATTCAGAA
TTCTGTGAAAACATGATAAATTTGACATTCTCTAAGATAATATATTAGTA
TTGTATGCCTCAAGAAAACTCATTTAGAATAAATATTAGATTAATATTTG
TAGAATTCTGGGAAAAAACTTTAAAAGATATTATTANAATACCAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_p24.b1 MSMg01no163_p24.b1 CHROMAT_FILE:
MSMg01no163_p24.b1 PHD_FILE: MSMg01no163_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:43 2005
         (688 letters)



>mm_chr4_20569799_20570886
          Length = 1088

 Score = 1282 bits (663), Expect = 0.0
 Identities = 678/683 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattccagtgatccctgatcatgcttcttttgagggccttgttttctttgtctcttcca 64
            |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 gaattccagtgagccttgatcatgcttcttttgagggccttgttttctttgtctcttcca 999

                                                                        
Query: 65   cttcctctggatcttacattccttccatctcttcaaccacaggtttcccaaacccttaga 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998  cttcctctggatcttacattccttccatctcttcaaccacaggtttcccaaacccttaga 939

                                                                        
Query: 125  agagggacatccagtttaaggcttagttttcaaaggttattattcattctctgcataatg 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938  agagggacatccagtttaaggcttagttttcaaaggttattattcattctctgcataatg 879

                                                                        
Query: 185  tctgagtgtgcatctctgtactaaatacagacttttgatacagtttgctaaggagatttt 244
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 878  tctgagtgtgcatctctgtactaaatacagacttttgatacagtttactaaggagatttt 819

                                                                        
Query: 245  attgtgtaaatttattaatatataaaatataagtgtaagtaatttataatttttactata 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818  attgtgtaaatttattaatatataaaatataagtgtaagtaatttataatttttactata 759

                                                                        
Query: 305  cctaaggtagataatgacattgaaaaactattgttttaagatccacagaagccacatatt 364
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 758  cctaaggtagataatgaccttgaaaaactattgttttaagatccacagaagccacatatt 699

                                                                        
Query: 365  tctggccctctccagaggctcaggccttgctctctgtctgtgcaagatcaagtgaaaagt 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698  tctggccctctccagaggctcaggccttgctctctgtctgtgcaagatcaagtgaaaagt 639

                                                                        
Query: 425  atgaaggatgaggaacaaagtctgaggctgcaatatggatccttttcctggtcccatgac 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638  atgaaggatgaggaacaaagtctgaggctgcaatatggatccttttcctggtcccatgac 579

                                                                        
Query: 485  tctctggtggtagcatgtctttctaagctgtcaagtattattttatgatctgcacccatt 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578  tctctggtggtagcatgtctttctaagctgtcaagtattattttatgatctgcacccatt 519

                                                                        
Query: 545  tttatcttcaattgggttttataatatatatgtatatataaaatacaatatgttgtatta 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518  tttatcttcaattgggttttataatatatatgtatatataaaatacaatatgttgtatta 459

                                                                        
Query: 605  taattatataaatataagtatatattatataaatataattgtataatacatattactaac 664
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 458  taattatataaatataagtatatattatataaatataattttataatacatattactaac 399

                                   
Query: 665  tatatcaccttagttatttttgt 687
            |||||||||||||||||||||||
Sbjct: 398  tatatcaccttagttatttttgt 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no163_p24.g1 MSMg01no163_p24.g1 CHROMAT_FILE:
MSMg01no163_p24.g1 PHD_FILE: MSMg01no163_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:43 2005
         (288 letters)



>mm_chr4_20385361_20386048
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaggccccaggctgctcaaggggactatgtatgtgaggatttaaccgaagactctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaggccccaggctgctcaaggggactatgtatgtgaggatttaaccgaagactctca 260

                                                                       
Query: 61  tgagcaaccctgtcagcttatgtaaaatgacactcaaaaaagtactattattgtctttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagcaaccctgtcagcttatgtaaaatgacactcaaaaaagtactattattgtctttag 320

                                                                       
Query: 121 ggaaaaagcagtttacatttctttaaaaactaaaattctaataaccaaaaaagtgaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaaaagcagtttacatttctttaaaaactaaaattctaataaccaaaaaagtgaggtg 380

                                                                       
Query: 181 gaacaagtcagtgagaaacaattgcatataggttttcttctgtgtggattacaatgaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacaagtcagtgagaaacaattgcatataggttttcttctgtgtggattacaatgaagg 440

                                                       
Query: 241 gtgatggggccattaagcctgacactccgatattgcacatgtgc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgatggggccattaagcctgacactccgatattgcacatgtgc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)