Query= MSMg01no164_b08.b1 MSMg01no164_b08.b1 CHROMAT_FILE:
MSMg01no164_b08.b1 PHD_FILE: MSMg01no164_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:50 2005
(316 letters)
>mm_chr4_147506098_147506813
Length = 716
Score = 598 bits (309), Expect = e-175
Identities = 309/309 (100%)
Strand = Plus / Minus
Query: 5 gaattcctttttaggaccagttaacatccccttctcctgaaggaccacagtgtgtttgta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaattcctttttaggaccagttaacatccccttctcctgaaggaccacagtgtgtttgta 541
Query: 65 ctctcatctgctgatggacatttggatctgctttggccaatcaactgacccatcttacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctctcatctgctgatggacatttggatctgctttggccaatcaactgacccatcttacag 481
Query: 125 atagggaaaccgaggccccacgtcaccataatctggatggggtaggagcctagtcctctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atagggaaaccgaggccccacgtcaccataatctggatggggtaggagcctagtcctctc 421
Query: 185 ctgagtcactcttggaagaacctggaggaacagagtcccacacttgggtaacaggcagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctgagtcactcttggaagaacctggaggaacagagtcccacacttgggtaacaggcagag 361
Query: 245 caacatttgggactgcctccaaggggcatctactggccatgcacaccaggctactgccca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caacatttgggactgcctccaaggggcatctactggccatgcacaccaggctactgccca 301
Query: 305 atccttgaa 313
|||||||||
Sbjct: 300 atccttgaa 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no164_b08.g1 MSMg01no164_b08.g1 CHROMAT_FILE:
MSMg01no164_b08.g1 PHD_FILE: MSMg01no164_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:50 2005
(481 letters)
>mm_chr4_147452911_147453795
Length = 885
Score = 752 bits (389), Expect = 0.0
Identities = 458/501 (91%), Gaps = 34/501 (6%)
Strand = Plus / Plus
Query: 1 actctgtagaccaggcctggcctcgatctctgacattcacttgcctctgcctcctgagag 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct: 215 actctgtagaccaggcctggcctcaatctctgacattcacttgcctctgcctcccgagtg 274
Query: 61 ctgggattaaccacccaccaggcaggtttttaatattctggattgtttgtttttatctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctgggattaaccacccaccaggcaggtttttaatattctggattgtttgtttttatctat 334
Query: 121 ctttctttctttctctctctctctctcttctctctctctctgtttgtgtgtgtgtgtaaa 180
|||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 335 ctttctttctttctctctctctctct--------tctctctgtt------tgtgtgtaaa 380
Query: 181 acctcataccatgacaagagtatgtgtggaggtcagaggacaactttctcaagtcggtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctcataccatgacaagagtatgtgtggaggtcagaggacaactttctcaagtcggtcc 440
Query: 241 aaaactaaacacagattgtcacgctaagtagta----gactcctttcacctgctgctgag 296
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 aaaactaaacacagattgtcacgctaagtagtagactgactcctttcacctgctgctgag 500
Query: 297 ccgcgtctctggaccccggctcatgttttatactgtgctgcatacaacctaaataaacct 356
|| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 cctcgtctctgggccccggctcatgttttatactgtgctgcatacaacctaaacaaacct 560
Query: 357 aagggttttgtgagaggttgcctcacaactaccgccctctagtggcacacgctgctcctc 416
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 aagggttttgtgagaggttgcctcacaactacctccctctagtggcacacgctgctcctc 620
Query: 417 actccgctcacactgggctcaggatgctgattgtatgggatg----------------gt 460
|||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 actctgctcacactgggctcaggatgctgattgtatgggatgctgattgtatgggatggt 680
Query: 461 gttccacagtgatcctgtcca 481
|||||||||||| ||||||||
Sbjct: 681 gttccacagtgaccctgtcca 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 885
Length adjustment: 10
Effective length of query: 471
Effective length of database: 875
Effective search space: 412125
Effective search space used: 412125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
