BAC Information

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BAC

Clone NameMSMg01-164I13
Chromosome4 (Build37)
Map Location 116,417,848 - 116,418,031
singlet/doubletsinglet
Overlap geneTesk2
Upstream gene4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik
Downstream geneToe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164I13.T7 (MSMg01no164_i13.b1)MSMg01-164I13.TJ (MSMg01no164_i13.g1)
ACCAG362981AG362982
length798733
length of high quality
(start - end)
274 (42 - 315)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no164_i13.b1 PHD_FILE: MSMg01no164_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:25 2005CHROMAT_FILE: MSMg01no164_i13.g1 PHD_FILE: MSMg01no164_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGAGGGTCTCCAGCCAGCCAAGGACTTCCTACATAGGCTCCCGATTT
TTCTTATGCCGGCCTCAACCGTGCTGTGTATAAAAGGATAAGGTTGAGAT
CTTGATCCTCCTGCCTTCACTTTCCCATGCTGGGACTACTGGATTGAGCC
ACCAAACCTGGCTCATTTGATTTTTCCTAAGCAATCATTCATGAGGCATT
TATTCATTATTTATGTATACTTGAAAGAAGTGTACACTGTAGTTTTCTAT
TCTCTATTTAACAAGATTATGATTAGTCTAAAATATTTATGGATCAAAAA
CACAACTGTTTTATTCCCCCCCCCCCCCCCACACTAAGTGTTCTTACTGC
TGTGCTGTTCCCCCCCCCACGAAAAAAAAACAAAAGTTTTTATTCGCCGA
TTCCTCCCTTCTTAATCTCTGTTTTTAATTTAACTTTCCTCTCTCTTTGT
GCACTTTTTACACCTAATTATTTTGTCTTTACATACCCTATTTCTCCATA
TATAATTTTCTCCCTTCATCTTGTTATCTATCTTTTTACCTCCAACTATT
TCTATGTTTTATGTTTCCTTGTCTTTTTTATCTCTGCCACTCCATTTCTT
CTTTAATATTATTCTTTTTATTTATCTTTATCTTTCTTTATTTGCTTCAC
AAAATATACACCCCCCTCCTTCTAAATTTTTTTCCTCTACTTATTTTTAT
CTTCCCTCCTGCTCATAATTTTTTTTTCTTTATTTACTGTTATTTTTA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATAAAAGGCTAATCAAGCTTATGACAG
TAAACAATTTTCTTAATCTTTATTGCAACATTAGCTGTAATTGTAAATTT
TTATTATTTATTTTTATGTGCATTGGTATTTGCCTGTATGTATGTTTATG
AGGGTATCAGATGCTCTGGGATTGGAATTACAGACAGGTGTGAGTTGCAC
ATGTGGTTGCCGGGAATTAAACCTGGGTCCTCTGGAAGAGCAGAAAGTGC
TCTTAACTGCTGAGTCATCTCTCCAGCCCCTTAAAATTCTTATAGTTGGA
AATACATTATTTTATTAGCCCCCCCCCCACCTGTTTTCATTTTGCACAGT
AATCACTTCCTACCCCGCCTCCATAATTAAATCTACTTTAATAAAACATT
GCACTAAACACTATTTTACATTTGCATCCTGTATATTCCTTATGACATAG
AAATTAACTTCTATACTGAATATTAAAAATATTATGTTTCATAAATAAAT
GAATGAACAAGCATGAAGAAAACTAACTTGGCATCACACTAATAAGAGGG
TCTTTTGACAATGGCTACATTGGCAAAAATTGATACACTTTGAAATGACT
TTCAAAAGACAGAAGAGACTTGTGCTAATAAAACACTCATTTTGCAATCT
ATTACCAAGTAAAAGTTGATCCAAGCCAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_i13.b1 MSMg01no164_i13.b1 CHROMAT_FILE:
MSMg01no164_i13.b1 PHD_FILE: MSMg01no164_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:25 2005
         (274 letters)



>mm_chr4_116417558_116418231
          Length = 674

 Score =  333 bits (172), Expect = 8e-96
 Identities = 181/184 (98%)
 Strand = Plus / Plus

                                                                       
Query: 91  aaaaggataaggttgagatcttgatcctcctgccttcactttcccatgctgggactactg 150
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 291 aaaaggataaggttgagatcttgatcctcctgccttcagtttcccatgctgggactactg 350

                                                                       
Query: 151 gattgagccaccaaacctggctcatttgatttttcctaagcaatcattcatgaggcattt 210
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 351 gattgagccaccaaacctggctcatttgtttttttctaagcaatcattcatgaggcattt 410

                                                                       
Query: 211 attcattatttatgtatacttgaaagaagtgtacactgtagttttctattctctatttaa 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 attcattatttatgtatacttgaaagaagtgtacactgtagttttctattctctatttaa 470

               
Query: 271 caag 274
           ||||
Sbjct: 471 caag 474



 Score =  147 bits (76), Expect = 6e-40
 Identities = 91/96 (94%)
 Strand = Plus / Plus

                                                                       
Query: 10  ctttgagggtctccagccagccaaggacttcctacataggctcccgatttttcttatgcc 69
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || 
Sbjct: 1   ctttgagggtctccagcgagccaaggacttcctacataggctcccgatttttcttaggct 60

                                               
Query: 70  ggcctcaaccgtgctgtgtataaaaggataaggttg 105
           ||||||||| |||||||||| |||||||||||||||
Sbjct: 61  ggcctcaactgtgctgtgtagaaaaggataaggttg 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)