BAC Information

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BAC

Clone NameMSMg01-164N15
Chromosome4 (Build37)
Map Location 102,607,302 - 102,607,614
singlet/doubletsinglet
Overlap geneSgip1
Upstream geneLOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
Downstream geneTctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164N15.T7 (MSMg01no164_n15.b1)MSMg01-164N15.TJ (MSMg01no164_n15.g1)
ACCAG363193AG363194
length735732
length of high quality
(start - end)
319 (47 - 365)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no164_n15.b1 PHD_FILE: MSMg01no164_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:49 2005CHROMAT_FILE: MSMg01no164_n15.g1 PHD_FILE: MSMg01no164_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATATCTGGAATGTCAGTTTTCTAAACCAACCCCAAACGTACTT
GAGTTTGCCACACATACTTGCAAAACGGTTAGGCAAGAGCCTGGTTGACA
GAGTCAAGTTCCTTAGCCAAAGAAGGTTCCATTTTGTTCTGCTTTTAATT
GGCCATCGTTAATTAAGTAACTGAGGTCAACTGCAAATCAGCTTTAATTT
GTTCAATGTGGATAATTGAAGAACACATACAAACCAAATTCATGAAATGC
CTTCTTTAGTTCTTGATGCTTTCTAAGTAGCCATAGCATTTTTCAATGGA
GAAAGCAAGATCATTTTTTTTGACCACCACCTCCCGATTTTTAAATGAGA
ATTAAAAACAACACAGGACCACGCATTAGAATCTGGTATGCTATGCACTA
CTTACCTTCAAAAGTCAAATAAAACTTTCCTCTGTCAAACCAAACGAGGG
AGGGCTGTTCATTCTCTGTTTGGCCAGGAGTTGAAGCGGGATGGGGAAGG
TTAAGGAAAGGGAGAGAGAAGGACACGATGTGAGTCACAGAGCAGGTAAT
TAATCTCACTACGGGGAAGGGCGGGGCACTGCATGCCGTTAGCGTGCAGG
AAAAAGGGAAGGCTGGCGGTCTAGAGCTGTTTGGTTTTTCTTTTTCCTTA
AAATTGAGCAAACCTAGCTTAATCGAAGCTATGTA
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTTATACAAGGTCTGATTCCATGA
ACAGATTACATCTATATCATTGAGGAGTTTTTAAATCTATATTTGTAAGA
AATACTGGCTTGTAGAGTTTTATATATTATATATATTATATATATATAAT
GTCCTTGTTTGGAGTTTTTCGTTAATTATAGCCTTATAAATTAGTTAAGA
TCATTCATCTACTTCTATTTTGTGAAATAGATGCTAAAGAATTTATATGA
TTTCTTCCTTCTATGCTCAGTAGATTTCACTAGTGAGTCTCTGTGGGTTA
TAATGCATTCTTTTTTGAAAGCCCCCCCCCCTAGTTCAATTTCCTTAATA
CATATACCTGTCCAGACCATCTTTCTGTTCTTACATGAGTTTTGGCAGCT
TACACCTTTCAAGGAATTGGTGCATTTCATCTTAGATATCAGATCTGGAG
CACTGTTACGCATGTTGTTCCTTTATTACCCTGTAAATACCCATGATATT
CTGTCTTATACCTGTTACTTTATCATCTACATCATCACTCTTTTTTTCTT
ATCTTAGCCATGGGATTACTTTTGATCTTATTATAATACTAGCTTTGGTT
TTGTTGCCAGATTATTTCTAGGAACCATCTGAAACTTCCTTTTTTGAGAC
CAAGAAAACCCCAAGTGTTTTTGAAAATTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_n15.b1 MSMg01no164_n15.b1 CHROMAT_FILE:
MSMg01no164_n15.b1 PHD_FILE: MSMg01no164_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:49 2005
         (319 letters)



>mm_chr4_102607098_102607816
          Length = 719

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatatctggaatgtcagttttctaaaccaaccccaaacgtacttgagtttgcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattctatatctggaatgtcagttttctaaaccaaccccaaacgtacttgagtttgcca 458

                                                                       
Query: 65  cacatacttgcaaaacggttaggcaagagcctggttgacagagtcaagttccttagccaa 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cacatacttgcaaaagggttaggcaagagcctggttgacagagtcaagttccttagccaa 398

                                                                       
Query: 125 agaaggttccattttgttctgcttttaattggccatcgttaattaagtaactgaggtcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agaaggttccattttgttctgcttttaattggccatcgttaattaagtaactgaggtcaa 338

                                                                       
Query: 185 ctgcaaatcagctttaatttgttcaatgtggataattgaagaacacatacaaaccaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgcaaatcagctttaatttgttcaatgtggataattgaagaacacatacaaaccaaatt 278

                                                                       
Query: 245 catgaaatgccttctttagttcttgatgctttctaagtagccatagcatttttcaatgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 catgaaatgccttctttagttcttgatgctttctaagtagccatagcatttttcaatgga 218

                        
Query: 305 gaaagcaagatca 317
           |||||||||||||
Sbjct: 217 gaaagcaagatca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)