BAC Information

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BAC

Clone NameMSMg01-164O07
Chromosome4 (Build37)
Map Location 20,318,747 - 20,319,032
singlet/doubletsinglet
Overlap geneE130310K16Rik
Upstream geneCngb3, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164O07.T7 (MSMg01no164_o07.b1)MSMg01-164O07.TJ (MSMg01no164_o07.g1)
ACCAG363218AG363219
length744747
length of high quality
(start - end)
189 (126 - 314)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no164_o07.b1 PHD_FILE: MSMg01no164_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:52 2005CHROMAT_FILE: MSMg01no164_o07.g1 PHD_FILE: MSMg01no164_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAACCGCGGAATT
CTCACCTGTGCAATACAGAATGGCAGAGAAGCACCTGAAAAAAATGCTCA
ACATCCTTAATCTTTATGGCAATGAAAATCAAAACAACCCTGAGATTCCA
CCTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAAAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGAAA
ACTGGATATAGTACTTTTTTTAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCTTATTTTGTCCCACCCCCCCCCAAGGACACATGCTCCACTATGTT
CATAGCAGCCTCACCTATAATAAACAGAAGCTGGAAGGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTATAAAGAATGAATTTATGAAATTCCTGTTCCAATG
GATGGACCTGGAGGACATCATCCTGAGTGAGGTAACACATTCCCCAAGGA
ACTCTCCTCATATGTACTCACTGATAAGCGGATATTATCTCCAAACCTAA
TATACCCTAGATTTTTGATACGCTTTTCCTAAACTCTTGAACTCTAGAAT
TTTGAACACTGATGTGTGATCCCTATTCCCCTCCTTTATAATGA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCATCTACCCAGCCCCACAAGTGTCCAC
AGCTGTAGAGGAGCCTGACAACTCCATCCTGACCACCTATACCACCCTGG
AACACTAACTGTGCCTTCATGGTGGACAATGAGGCTATTTATGACATCTG
CCGCCATAACCTGGATATTGAACATCCAACCTCATCTGCCTCATCAGCCA
AAATGTCTCCTCCATCACAGCTTCCTTGCACTTTGGTGGGGCCTTCAGTG
TGGACCTGACAGAGTTCCAGACCAACCTGGTGCCCTACCCTTGGCTACCT
ATGTACCTTTCTTTTCTCCCCACCACGCCTATTATGAGCAGCTATCAGTG
GCAGAGATCCCCCCCGCCTGTTTTGAGCCTGCCAACAAGATGGTGAAATG
TGACCCTCGGCATGGCAAGTATATGGCCTACTGCCTGCTGTACAATGGAG
ATGTGGTGCCCAAGGATGTTAATGCTGCCATTGCTGCCACCAAGACAAAG
CACATCATCCAGTTTGTGGACTGGTGTCCCATAGGCTTAAAGGTTGGAAT
CAACTACCAGCCACCCACTGAGGTGCCTGGGGGTGACCTGTGCCAGGTGC
AGCATGCAGTGTGCATGCTGAACAACACAACTGCCATTGCTGAAGCCTAG
GCCTGTCTGGACCCAAGATTGCCAAGAAGGTTTTTGACCCCGTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_o07.g1 MSMg01no164_o07.g1 CHROMAT_FILE:
MSMg01no164_o07.g1 PHD_FILE: MSMg01no164_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:52 2005
         (286 letters)



>mm_chr4_20318547_20319232
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatctacccagccccacaagtgtccacagctgtagaggagcctgacaactccatcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatctacccagccccacaagtgtccacagctgtagaggagcctgacaactccatcctg 260

                                                                       
Query: 61  accacctataccaccctggaacactaactgtgccttcatggtggacaatgaggctattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accacctataccaccctggaacactaactgtgccttcatggtggacaatgaggctattta 320

                                                                       
Query: 121 tgacatctgccgccataacctggatattgaacatccaacctcatctgcctcatcagccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacatctgccgccataacctggatattgaacatccaacctcatctgcctcatcagccaa 380

                                                                       
Query: 181 aatgtctcctccatcacagcttccttgcactttggtggggccttcagtgtggacctgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtctcctccatcacagcttccttgcactttggtggggccttcagtgtggacctgaca 440

                                                         
Query: 241 gagttccagaccaacctggtgccctacccttggctacctatgtacc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagttccagaccaacctggtgccctacccttggctacctatgtacc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)