XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
CCTTTGCATCTCTTATGTGTTTATGAAGGTAGAAGTGCTTCAAGTCATTG
TTGTTCCAATTGTAAAGCAAATTAGTCCAACAGTAGCTAGATATTAACTC
AGCCAACCTTGAAAGGACATGGGAATCCTGGTGGGATAAAGGGGCCAGGT
ACCTATTTCAACTCAGTTGCTTCTTGGATGGCTACAGCATGAGTATATTA
CTTGCTGATGGCCTTTTGATGTGAATCACTGCACAGATGTCTGCGAGAGT
GGCCATTCAAGCTATGCCTTCATCTCTTCTTGTTTTGATATGCTTCGTTT
CAACAAAGCCTGAAACTGGGTTTGCCAGGACTGCATTACTGGAGCTTTAA
AAGTTGGACCACACTCTGTGGCAGTCAAAAGTGTGACTTAAAAGTACCGA
CTTTGAAAGTCTGTAAGGGCTAGCACCTCTAGCCCTCCTTGTAGTGTGTA
TGAATTAATGCAGTATTTCATCCCTACCATCAGTCTATCTTCATGTGAAC
CAGGACAACAGATGGGAGAAAAGCAGAACAGAATTACTGTCCATTGAAAG
CATCGTATTTAAAGACTCTATTTTTGTAATAACGAAATGGCCACCTGATT
ATTAAAATCCAGCGTCATTATAGTCAGATTTGAATTATATCTGTAGAATT
TTCATAGCATATCCTTCCTTTATTTCTTCCATTGAAGTTCTGCCTT

NNNTTAAAANNNNNNAAATGACGGAGCCGGCGGCCCCGGNCCCCAXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGTTTGAGGAATCCCCAAT
GGCTGAAAAGCACCCTATAGAAATGTCTCANCATAATTAGTCATCGTGAA
ATGAAAATCAAAATAACCCTGAGATTCCACCTCACACCAATCGAATGACT
AAGATTAAAAACACAGGTAACAGGAGATGCTGGCGAGTGGGGAGAAAGAG
GAACACTCCTCAATTGCTGGTGGGATTTTAAGCTGCTAAAACTACTTTGG
AAAACAATCTGTTCCTCAGAAAACTGGAAATTCTTCTACATGAAGACCCA
NCTATAACCACTACTAGGCATATACCCCAAAGACAGTTCAATGTATAACA
AGGACACATACTCTAGTATGTTTGGAATAGACTTATTTATAATAACCAGG
AGCTGGAAACAACCAAGATGTCCTTTAATGGAAGAATGAATACAGAAAAT
GTGATACATTTACACAATGAAGTAGTACTCAGCTATTTAAAACAATGACT
TCATGAAATTCACAGGCAATGGATGGAACTAGAAAATATCATTCTGAGAT
AACCCAGACCAAAAGGACACTGTGGTATATACTCATAGTAAATGGATATT
ACCCCAAAGCTCAGAATATCCTGATAGAACCTGACAGATCTATGAAGCTT
TGAAGGAAAAACAAATTGTGGATGCCTTCATCCTTCTTAGAAGGGGGAAT
GAAATAATTCCAGGAGGTAGAGGGAGAGAGGGACCTGCGAAGGAGAGAGA
AAGGGGAGGAAAAAAAAAAGGAGTGCCATATCCCGAGGGAAGTCCCGAAG
GTCCGGAAAATGAATAGAAAAATGTACCCGTTTGCGGGCTGGAGAAACGG
GTGGAGGCCCCCAAAAAAGTCCCCCACTCCCCCGGAAGTGAGTGGTTTCC
CCCGCACCCCAAGAGGAAAAACCTTACCTGACCCCCCCCCCCCCCAGGGG
GAAAGAAGGCCCCTCCCCTTAAAAAAGGACCCCCCCCCCCCCTTGAAGGA
GAAGGGCCCCCCCCCCCCCCCCCTCCAAACCTTTTTTTACCCCCCCAAAT
TATTTCCCCCTCCCACAGGAAAATGTGCCCCCCACCCCAAAAATGGTACA
CCCACAACTG

Query= MSMg01no165_c14.b1 MSMg01no165_c14.b1 CHROMAT_FILE:
MSMg01no165_c14.b1 PHD_FILE: MSMg01no165_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:13 2005
         (709 letters)



>mm_chr4_36025660_36026768
          Length = 1109

 Score = 1350 bits (698), Expect = 0.0
 Identities = 704/706 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctcctttgcatctcttatgtgtttatgaaggtagaagtgcttcaagtcattg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 ggaattctctcctttgcatctcttatgtgtttatgaaggtagaagtgcttcaagtcattg 850

                                                                       
Query: 64  ttgttccaattgtaaagcaaattagtccaacagtagctagatattaactcagccaacctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ttgttccaattgtaaagcaaattagtccaacagtagctagatattaactcagccaacctt 790

                                                                       
Query: 124 gaaaggacatgggaatcctggtgggataaaggggccaggtacctatttcaactcagttgc 183
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 789 gaaaggacatgggaatcctggtgggataaaggggccaagtacctgtttcaactcagttgc 730

                                                                       
Query: 184 ttcttggatggctacagcatgagtatattacttgctgatggccttttgatgtgaatcact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttcttggatggctacagcatgagtatattacttgctgatggccttttgatgtgaatcact 670

                                                                       
Query: 244 gcacagatgtctgcgagagtggccattcaagctatgccttcatctcttcttgttttgata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gcacagatgtctgcgagagtggccattcaagctatgccttcatctcttcttgttttgata 610

                                                                       
Query: 304 tgcttcgtttcaacaaagcctgaaactgggtttgccaggactgcattactggagctttaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgcttcgtttcaacaaagcctgaaactgggtttgccaggactgcattactggagctttaa 550

                                                                       
Query: 364 aagttggaccacactctgtggcagtcaaaagtgtgacttaaaagtaccgactttgaaagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aagttggaccacactctgtggcagtcaaaagtgtgacttaaaagtaccgactttgaaagt 490

                                                                       
Query: 424 ctgtaagggctagcacctctagccctccttgtagtgtgtatgaattaatgcagtatttca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctgtaagggctagcacctctagccctccttgtagtgtgtatgaattaatgcagtatttca 430

                                                                       
Query: 484 tccctaccatcagtctatcttcatgtgaaccaggacaacagatgggagaaaagcagaaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tccctaccatcagtctatcttcatgtgaaccaggacaacagatgggagaaaagcagaaca 370

                                                                       
Query: 544 gaattactgtccattgaaagcatcgtatttaaagactctatttttgtaataacgaaatgg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaattactgtccattgaaagcatcgtatttaaagactctatttttgtaataacgaaatgg 310

                                                                       
Query: 604 ccacctgattattaaaatccagcgtcattatagtcagatttgaattatatctgtagaatt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccacctgattattaaaatccagcgtcattatagtcagatttgaattatatctgtagaatt 250

                                                         
Query: 664 ttcatagcatatccttcctttatttcttccattgaagttctgcctt 709
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttcatagcatatccttcctttatttcttccattgaagttctgcctt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)