XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATT
CACTTTTCACTGTCGTAGTAGCTTGAAGCCTTAAAATAAGGAGCCACAAA
AACCAGCTTTTGTTCTCCTTGACTTTTATTATGAGGGCTCTAATCCCATT
CACAAAGCCTTCACTTTTATGACCTCATCAGCTCCCAAAAGTTATTTTTT
AAAATATATTTTTACCCTCTGTAGATTTTTCTCATATAAATTTCTATCTA
AATTTTCTTTAATAAGAAAACTTTATATAAATTTGAGTTTAGTTGAGGCT
GGGAATATAGCCTAGTAGGCAAAGCATCAGCACACAGATAAACACCTAGA
CATGTAATAAGTGTCTGTGATCCCAGCATTGAGGAAGTAGAGACAGGAGG
ATCCTCAGTGCTTGGTGGCTGGTAATCTTGCTTATTCAGTTTTTTCAAGG
TTCAATGAGAGACTCTGTGACCAAAATCAAGGCAGAAAGCAATAGAGGAA
GGAATCCAATATAAATCTCTGGCTTCTAAATGTACATGAATATATACGTG
CAAATATTTACGTGTATATGCCACAGTCACTTGAACAAATGTACTGCACA
CAAATTCATTAATATACACACATATATATTCATATATATATATATATATA
CAAACACATACTCATGGACATGCACACACACTTTGTTTTCTATTTTTTCC
TTTCCCTAATTTTTTTTTATTATTTTCTTCA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTCCCGTTTTTAATTGG
GTTATTTGGGTTGTTGGTGGCTAACTTCTTGAATTCTTTATATATTTTGA
ATATTGCATCTTCACAGCTGCAGGGGTAATGTAGATCTTTTGCCAATCTA
TAGGATGTCATTCTGTCCTATTGTTGGTTCTTTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTT
TTTTTTTTTTTTTTTTTTTTGCCTTACAGAAGCTTTTCAGTTTCATGAGG
TCATACTTATAAAGTCCTGGTCTTAGTGTATGAGTTATGGGTGTTCAGTT
AAGAAAGTTGTCCACCGTACCAATGAGTTCAAGGCTAGTGCCCACTTTCT
GTTCTATTAGATTTAGTGTGTCTGTTTTTACAGGTTCCTGATCTACTTGA
ATTTTGTAAAGAGTGATAAATATGAATATATTTTTAATCTACTGCATGCA
GATATTCAGTTAAATAAGCACTATTTCTTCAAGATAATACTTTGTTTTTC
CATTGCATGAATGTGTATGGATTCCTCATCCAAAATATGTTTCCCTGGTA
TTTGGATTTATTTCTGGGATTTCTATATGAATCCATTCTCCTACCTATTT
GGTTCTTCATAAATACCTTGAACCTTTC

Query= MSMg01no165_k05.b1 MSMg01no165_k05.b1 CHROMAT_FILE:
MSMg01no165_k05.b1 PHD_FILE: MSMg01no165_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:52 2005
         (665 letters)



>mm_chr4_16520264_16521328
          Length = 1065

 Score = 1199 bits (620), Expect = 0.0
 Identities = 655/670 (97%), Gaps = 9/670 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   agcttgaagccttaaaataaggagccacaaaaaccagcttttgttctccttgacttttat 63
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 agcttgaagccttaaaataaggagccacgaaaaccagcttttgttctccttgacttttat 263

                                                                       
Query: 64  tatgagggctctaatcccattcacaaagccttcacttttatgacctcatcagctcccaaa 123
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 tatgagggctctaatcccattcacaaagccttcacttttatgaccttatcagctcccaaa 323

                                                                       
Query: 124 agttattttttaaaatatatttttaccctctgtagatttttctcatataaatttctatct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 agttattttttaaaatatatttttaccctctgtagatttttctcatataaaattctatct 383

                                                                       
Query: 184 aaattttctttaataagaaaactttatataaatttgagtttagttgaggctgggaatata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaattttctttaataagaaaactttatataaatttgagtttagttgaggctgggaatata 443

                                                                       
Query: 244 gcctagtaggcaaagcatcagcacacagataaacacctagacatgtaataagtgtctgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcctagtaggcaaagcatcagcacacagataaacacctagacatgtaataagtgtctgtg 503

                                                                       
Query: 304 atcccagcattgaggaagtagagacaggaggatcctcagtgcttggtggctggtaatctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atcccagcattgaggaagtagagacaggaggatcctcagtgcttggtggctggtaatctt 563

                                                                       
Query: 364 gcttattcagttttttcaaggttcaatgagagactctgtgaccaaaatcaaggcagaaag 423
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 564 gcttattcagttttttcaaggttcaatgagagactctgtgtccaaaatcaaggcagaaag 623

                                                                       
Query: 424 caatagaggaaggaatccaatataaatctctggcttctaaatgtacatgaatatatacgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caatagaggaaggaatccaatataaatctctggcttctaaatgtacatgaatatatacgt 683

                                                                       
Query: 484 gcaaatatttacgtgtatatgccacagtcacttgaacaaatgtactgcacacaaattcat 543
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 g-aaatatttacgtgtatatgccacagtcacttgaacaaatgtactgcacacaaattcat 742

                                                                       
Query: 544 taatatacacacatatatat------tcatatatatatatatatatacaaacacatactc 597
           ||||||||||||||||||||      ||||||||| ||||||| ||||||||||||||||
Sbjct: 743 taatatacacacatatatatatatattcatatatacatatatacatacaaacacatactc 802

                                                                       
Query: 598 atggacatgcacacacactttgttttctatttttt-cctttccctaattttt-ttttatt 655
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 803 atggacatgcacacacactttgttttctatttttttcctttccctaatttttcttttatt 862

                     
Query: 656 attttcttca 665
           ||||||||||
Sbjct: 863 attttcttca 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)