BAC Information

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BAC

Clone NameMSMg01-166H04
Chromosome4 (Build37)
Map Location 55,735,212 - 55,735,666
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166H04.T7 (MSMg01no166_h04.b1)MSMg01-166H04.TJ (MSMg01no166_h04.g1)
ACCAG364269AG364270
length730737
length of high quality
(start - end)
78 (428 - 505)455 (77 - 531)
definitionCHROMAT_FILE: MSMg01no166_h04.b1 PHD_FILE: MSMg01no166_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:57 2005CHROMAT_FILE: MSMg01no166_h04.g1 PHD_FILE: MSMg01no166_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGCCGAAGCCGAAC
GGAANNCAAGGCCCATTAACCNNCACGGGAGAANGAANCNACAGCAAACC
AGNAGCCAACANCAAAGNAAAGGGGGACCACCNAGAAGCAAGCCCACAAA
AANCAGGGACAAGACAAGGCGGCCCAANNNCNCCCAACCAANNCAACANG
GNACNNGAAGNCCAAGCCAGAGCAANNCGACAACAAAAGGAGAACAAGGG
GANACAAATTTTTTAGGAAGAAGNCAAAANANCACNNNNGGCAGAAGANA
NGANAGNANANANAAGGGACCCNATTATTTTTTTTTTAGAACNCCNAAAC
CTGANAAGCAGCTTCATTGAATTACCCGCCCATCAAATTAACTCAAACAA
GTCAATGGTCTTTCTGTACACCCCGGATACACAGGCTGAGAAAGAAATTA
GGGAAACAACACCCTTCTCAACAGCCACAAATAATATAAAATACCTTGGC
GCGACTCTAATTAAGGAAGTGAAAGATCTGCATGATAAGAACTTTAAGTC
TCTGAAGAAAGAAATTAAAGAAGATCCCAGAAGATGGAAAGATCTCCCAT
GTTCATGGATTGGCCGAATCAGGCCAGCACACCTGGTTATCTCCCCCCAG
CACCCACCGATTCACGCTTTTTTTTTCTAATATCCCAACTCCCTCTTCAC
CGACCCCATAATGGCCACACGTAAACCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACATATATAACAGTGGGCAACT
CGCTTGGCTTAACTGATCTGCCTCAGTTTCCTAGTATTTGGAATTAACAG
AGAGATTTGAAATGAAGCAATGTTGAGCCGCAGGGAACACTTAGTAATGC
CTGGAAGAATTCTTTGGTTGTCACAACTCTGAGAAGGCCATATAGGGAGC
GGGAAGAGGTCAGAGTTGCTGGTGAGTGCTGAATGACGACCACGGGATGG
CCCTGCCAGTCCTTGGCTCCTGTGTCCCCAGGGCTGAGACTGAGAAATCC
TGAGGCATAGTGATGACATAGAGTAGTTGGCGATGTAAGTGACAGCACGT
GGGCTGTACTGCTCCGCTGGACATGAAGTGGCCCCGACTGTGCTAAGTCA
TTACCATGGAAGTTACGAAAGTCATTAAAAAAAAACACACACACTTTAAG
GCTACCACCAGTCTGAGGTAGATTTGGAGGAAAAGGCCATCTGAATACAG
AAGGACTAATTAGACCTCCCCCACCTCAAAGAGCTCCTCTCTCCTCACTC
TTTTCCTTCTCCTCTGCCCTTTTGGTCACCATTTATTGAGCATGTATTTT
TTTTATTACGGCCTTTATTATTCGACTTGTGCTATTGCTTAATAGACTAA
CTTGTATGCCCTTGATTTGTCCCTCACTTTTCCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_h04.g1 MSMg01no166_h04.g1 CHROMAT_FILE:
MSMg01no166_h04.g1 PHD_FILE: MSMg01no166_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:57 2005
         (455 letters)



>mm_chr4_55735012_55735866
          Length = 855

 Score =  872 bits (451), Expect = 0.0
 Identities = 454/455 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacatatataacagtgggcaactcgcttggcttaactgatctgcctcagtttcctagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacatatataacagtgggcaactcgcttggcttaactgatctgcctcagtttcctagta 260

                                                                       
Query: 61  tttggaattaacagagagatttgaaatgaagcaatgttgagccgcagggaacacttagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggaattaacagagagatttgaaatgaagcaatgttgagccgcagggaacacttagta 320

                                                                       
Query: 121 atgcctggaagaattctttggttgtcacaactctgagaaggccatatagggagcgggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcctggaagaattctttggttgtcacaactctgagaaggccatatagggagcgggaag 380

                                                                       
Query: 181 aggtcagagttgctggtgagtgctgaatgacgaccacgggatggccctgccagtccttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtcagagttgctggtgagtgctgaatgacgaccacgggatggccctgccagtccttgg 440

                                                                       
Query: 241 ctcctgtgtccccagggctgagactgagaaatcctgaggcatagtgatgacatagagtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctgtgtccccagggctgagactgagaaatcctgaggcatagtgatgacatagagtag 500

                                                                       
Query: 301 ttggcgatgtaagtgacagcacgtgggctgtactgctccgctggacatgaagtggccccg 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ttggcgatgtaagtgacagcacgtgggctgtactgctctgctggacatgaagtggccccg 560

                                                                       
Query: 361 actgtgctaagtcattaccatggaagttacgaaagtcattaaaaaaaaacacacacactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtgctaagtcattaccatggaagttacgaaagtcattaaaaaaaaacacacacactt 620

                                              
Query: 421 taaggctaccaccagtctgaggtagatttggagga 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 621 taaggctaccaccagtctgaggtagatttggagga 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)