BAC Information

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BAC

Clone NameMSMg01-166H18
Chromosome4 (Build37)
Map Location 116,270,319 - 116,417,558
singlet/doubletdoublet
Overlap geneLOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2
Upstream geneLOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1
Downstream geneToe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166H18.T7 (MSMg01no166_h18.b1)MSMg01-166H18.TJ (MSMg01no166_h18.g1)
ACCAG364295AG364296
length771760
length of high quality
(start - end)		365 (47 - 411)496 (88 - 583)
definitionCHROMAT_FILE: MSMg01no166_h18.b1 PHD_FILE: MSMg01no166_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:00 2005CHROMAT_FILE: MSMg01no166_h18.g1 PHD_FILE: MSMg01no166_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,417,239 - 116,417,558)(116,270,319 - 116,270,814)
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCG
CGGAATTCCATCCCCAGTGCCTACTTCTTCAAGACTAAAGAAGACAATAC
AAGAAAGTAGTCCACAGAAAACTAAGAAGCATGCTAAAAATAAATGATGG
GAGTTTTCATGGTTTGACCCTGCCATTGGTCCTCACTTTGTGCTGCTTGC
TCAAGACAGTGTGTCTTCACCTAACTATAGGCTCAAAGCCCAGGAAGAGC
TGCATGGTCATCTCCACTCCAAAGCCAGGCAAAGACACATGTCAGCTCAC
TTACCCAGGCAGGAGTTCTCTCTTGCAGGGCAGCCTTTTTGTTCTTTTCA
GATTTTCAAATGATCAGTTGAAATGCCGGGCGTGGTGGCGCACGCCTTTA
ATCCTAGCACTCAGGATTTTCACCCCCGCGTATTTCTGAGTTCCAGGCCA
GCCTGGTCTACAAAGTGAGTTCCAGGAACGTCAGGGCTACACACATAATC
CCTGTCTCGAATTATCAAAACACAAAATCATTTCCATTTTACCACACATT
TTATTATGTCCCTTTTTTTTATGTCTCCCCTTTCTACCATCACTTTACCG
CCTCTCTCCATTTTCCCTCCTTTTTACCCCCCTTATCCCCCAACCGACCC
CTTTTTATTCCCCCGCCACTTCCCCCATTGTTTTTCCCCCTTTTTTCTTT
TCCCCCATTTCTCCCCTTCCCCCCTTTTTCTCCCTCCTCCCTTATTTTAT
TTCCCCTCCTATTTTCCACCC

CGCAATGGNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTACCTGCCCC
TACGGTTCAACCCGGAAACGCTGGCTGCAGAGATCCGGTGAGGACCCCGG
CCCTGGGTGGACAGGATCGGGAGTCTGTTCAGTCTGGGAGATCGCTTTCT
GCTGCCTTCTTGCTAGGATCCTACGTGAAGCCTACGTGCACGGTGGAGGC
CGGGACCCAGAAGTTCTGGACAAAATATTGCAGCTGCAAGTGGAAGCGTC
AGCCCTGGAATTGCAGCGGTCGCAAAACCGCAAGGGTGAACGAAAGGGTC
TATCATAGAGGGTTTCTACACTGATGGTCCTAGAGTTGGGAGGAGAAAAG
GGCTTGAGGGAGAGCACCACTAGAACGCCACGCACGTAAGCCCAAGGAAG
GAAAACCCATTGCCAGATGACAAATCCAGGCTTGTGCAGAAACCCTTAAA
GTTGGATTACTACATAATGCTTGACAGATCACTTTAATTCATCTCAGAAA
AACTAAGTGCCGCCTCTGAGGAGGTTCTAACGGTGGAAGCCGAAAACAGG
TTCCTGGAGGCAGAAATCCTGACATTGCAGAAGTAGATAGTCTTGATTCT
GTCGCCCTGCGGTCTGTGTATTTTACAGTCTCTCCCTAAGAAATCTCATG
GTAACCCACTCTTAAGCGTGGAAGGGACCAATTCTTTGAGTTGTTCCCCT
TGTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_h18.b1 MSMg01no166_h18.b1 CHROMAT_FILE:
MSMg01no166_h18.b1 PHD_FILE: MSMg01no166_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:00 2005
         (365 letters)



>mm_chr4_116417177_116417941
          Length = 765

 Score =  557 bits (288), Expect = e-163
 Identities = 312/320 (97%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccatccccagtgcctacttcttcaagactaaagaagacaatacaagaaagtagtc 66
           |||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 382 gaattctatccccagtggttacttcttcaagactaaagaagaaaatacaagaaagtagtc 323

                                                                       
Query: 67  cacagaaaactaagaagcatgctaaaaataaatgatgggagttttcatggtttgaccctg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cacagaaaactaagaagcatgctaaaaataaatgatgggagttttcatggtttgaccctg 263

                                                                       
Query: 127 ccattggtcctcactttgtgctgcttgctcaagacagtgtgtcttcacctaactataggc 186
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccatgggtcctcagtttgtgctgcttgctcaagacagtgtgtcttcacctaactataggc 203

                                                                       
Query: 187 tcaaagcccaggaagagctgcatggtcatctccactccaaagccaggcaaagacacatgt 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 202 tcaaagcccaggaagagctgcatggtcatctccactccaaagccaggcaaagccgcatgt 143

                                                                       
Query: 247 cagctcacttacccaggcaggagttctctcttgcagggcagcctttttgttcttttcaga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cagctcacttacccaggcaggagttctctcttgcagggcagcctttttgttcttttcaga 83

                               
Query: 307 ttttcaaatgatcagttgaa 326
           ||||||||||||||||||||
Sbjct: 82  ttttcaaatgatcagttgaa 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_h18.g1 MSMg01no166_h18.g1 CHROMAT_FILE:
MSMg01no166_h18.g1 PHD_FILE: MSMg01no166_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:00 2005
         (496 letters)



>mm_chr4_116270119_116271014
          Length = 896

 Score =  913 bits (472), Expect = 0.0
 Identities = 490/496 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttacctgcccctacggttcaacccggaaacgctggctgcagagatccggtgaggaccc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttacctgcccctgcggttcaacccggaaacgctggctgcagagatccggtgaggaccc 260

                                                                       
Query: 61  cggccctgggtggacaggatcgggagtctgttcagtctgggagatcgctttctgctgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggccctgggtggacaggatcgggagtctgttcagtctgggagatcgctttctgctgcct 320

                                                                       
Query: 121 tcttgctaggatcctacgtgaagcctacgtgcacggtggaggccgggacccagaagttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgctaggatcctacgtgaagcctacgtgcacggtggaggccgggacccagaagttct 380

                                                                       
Query: 181 ggacaaaatattgcagctgcaagtggaagcgtcagccctggaattgcagcggtcgcaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacaaaatattgcagctgcaagtggaagcgtcagccctggaattgcagcggtcgcaaaa 440

                                                                       
Query: 241 ccgcaagggtgaacgaaagggtctatcatagagggtttctacactgatggtcctagagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgcaagggtgaacgaaagggtctatcatagagggtttctacactgatggtcctagagtt 500

                                                                       
Query: 301 gggaggagaaaagggcttgagggagagcaccactagaacgccacgcacgtaagcccaagg 360
           || ||||||||||||||||||||||||||||||||||| |  | ||||||||||||||||
Sbjct: 501 ggaaggagaaaagggcttgagggagagcaccactagaatgggaggcacgtaagcccaagg 560

                                                                       
Query: 361 aaggaaaacccattgccagatgacaaatccaggcttgtgcagaaacccttaaagttggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggaaaacccattgccagatgacaaatccaggcttgtgcagaaacccttaaagttggat 620

                                                                       
Query: 421 tactacataatgcttgacagatcactttaattcatctcagaaaaactaagtgccgcctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactacataatgcttgacagatcactttaattcatctcagaaaaactaagtgccgcctct 680

                           
Query: 481 gaggaggttctaacgg 496
           ||||||||||||||||
Sbjct: 681 gaggaggttctaacgg 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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