ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTTTGGATTCTCCACTTTCCTTTCATGAATTAAATTTGCTCTT
TGGCAGTTTGATACACATAGATGTCCTCATTCCTCACGCTCTTATCTTTC
TCCTACCCCTGACACACCCCCTTCTTCAACAGGTCTTCTCACAGCCTTAG
CCTTTTGCTTTGTGACTCACTGATGTTAACCAGGACTGCGTGTGGGCTTA
ATGTTTGGAACACGTGTGAGAGCATTGACTGTCGTCCCACAAATCCATTG
ATTACCAATAGTTCAGAAAGGAGAGGCAGGGCTCCCATGAGGCCCCCCTA
ACATGTGATAACACATGATTGACTATTGACAGGCATAGTACATTTTTTTT
TTTTTTTTGGAAGCAGCCCCATGTAGCCAAGGTTAGCCCTGAACTCCTGA
TCCTGACTCCAAGTGCTGGGCTTATAGGCATGCATTGGTACATTCTGGGG
ACTTTTCATTATTAGCTTGTGAGTGTTACTGAAGTCTGCGGCTGCTCTAT
GTACCCTCTATATCCCTAACTCTCGGTTTAAAAATTCGCAGTCAGTTAGT
GTCTCCCTAGTTGGGCTTGACTCGGGAAGCTTCAACTGTTGACTCTTTGA
TCGCCAGGGTCAAATGCTCTTCGACTTTATTTCTTGTTTCATTTTAACGG
TCGATTGCAACTAATTTTATTTTTCCCCCACCTCTCTT

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGCATACTCCAGGCTCTGGTTGAG
GAAAGTGAAGACGTTGTCTCGGTGAGAGCTCACCTAAAGCAAAGAGAAAA
CCCCAATGTGCTGGGTCCACTACCGCAGAGCATTGGGCAACTCTTCTTCC
TGTAAGCACTGTATAGACCCCGACTCCTAAGCATCCCCACTGCCCATCTT
TGCCCAGAAGGCCCACAGGGGCCAGACTTTATCTTTTGATCCAACCACAA
TCATCACTTCTTTTTTTTTTTTTTTTTTTTGGNTTTTCTGGGTAGCCCTG
GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAAT
CCGCCTGCCTCTGCCCCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCAT
CGCCCGACTACAATCATCACTTCTAATGGAATGCCATCCCAGGTCTCCTA
TCAACCCATCTCCCTGGTGAAATGGAGGAAAAGACCCACAGTATATATTC
TCCACCATAGATGGTAAGTACATACTGTATCCAATTTCAATCTGTTTTGG
ACAGAAATGACACCCTGCATTTGTATCAACATGGCGGCCACGCTGCGCCA
CCGCCAAATCTCATATATATTTATCCCCATAATCTGACTACTTAGTATAT
TGTATCATTACGTACAGCCATTGTAGTTGTTTTAAAGCTCGCCN

Query= MSMg01no166_i23.b1 MSMg01no166_i23.b1 CHROMAT_FILE:
MSMg01no166_i23.b1 PHD_FILE: MSMg01no166_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:06 2005
         (535 letters)



>mm_chr4_106518206_106519140
          Length = 935

 Score =  965 bits (499), Expect = 0.0
 Identities = 525/537 (97%), Gaps = 6/537 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttttggattctccactttcctttcatgaattaaatttgctctttggcagttt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaattcatttttggattatccactttcctttcatgaattaaatttgctctttggcagttt 493

                                                                       
Query: 65  gatacacatagatgtcctcattcctcacgctcttatctttctcctacccctgacacaccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gatacacatagatgtcctcattcctcacgctcttatctttctcctacccctgacacaccc 433

                                                                       
Query: 125 ccttcttcaacaggtcttctcacagccttagccttttgctttgtgactcactgatgttaa 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccttcctcaacaggtcttctcacagccttagccttttgctttgtgactcactgatgttaa 373

                                                                       
Query: 185 ccaggactgcgtgtgggcttaatgtttggaacacgtgtgagagcattgactgtcgtccca 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 372 ccaggactgcgtgtgggcttaatgtttggaacacatgtgagagcattgactgtcgtccca 313

                                                                       
Query: 245 caaatccattgattaccaatagttcagaaaggagaggcagggctcccatgaggcccccct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caaatccattgattaccaatagttcagaaaggagaggcagggctcccatgaggcccccct 253

                                                                       
Query: 305 aacatgtgataacacatgattgactattgacaggcatagtaca------ttttttttttt 358
           |||||||||||||||||||||||||||||||||||||||||||      |||||||||||
Sbjct: 252 aacatgtgataacacatgattgactattgacaggcatagtacattttttttttttttttt 193

                                                                       
Query: 359 tttttggaagcagccccatgtagccaaggttagccctgaactcctgatcctgactccaag 418
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tttttggaagcagtttcatgtagccaaggttagccctgaactcctgatcctgactccaag 133

                                                                       
Query: 419 tgctgggcttataggcatgcattggtacattctggggacttttcattattagcttgtgag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tgctgggcttataggcatgcattggtacattctggggacttttcattattagcttgtgag 73

                                                                    
Query: 479 tgttactgaagtctgcggctgctctatgtaccctctatatccctaactctcggttta 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  tgttactgaagtctgcggctgctctatgtaccctctatatccctaactctcggttta 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_i23.g1 MSMg01no166_i23.g1 CHROMAT_FILE:
MSMg01no166_i23.g1 PHD_FILE: MSMg01no166_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:06 2005
         (379 letters)



>mm_chr4_106356358_106357137
          Length = 780

 Score =  559 bits (289), Expect = e-163
 Identities = 348/388 (89%), Gaps = 34/388 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcatactccaggctctggttgaggaaagtgaagacgttgtctcggtgagagctcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggcatactccaggctctggttgaggaaagtgaagacgttgtctcggtgagagctcacc 260

                                                                       
Query: 61  taaagcaaagagaaaa-ccccaatgtgctgggtccactaccgcagagcattgggcaactc 119
           |||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 261 taaagcaaagagaaaacccccaatgtgctgggcccactaccgcagagctttgggcaactc 320

                                                                       
Query: 120 ttcttcctgtaagcactgtatagaccccgactcctaagcatccccactgcccatctttgc 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgcctgtaagcactgtatagaccccgactcctaagcatccccactgcccatctttgc 380

                                                                       
Query: 180 ccagaaggcccacaggggccagactttatcttttgatccaaccacaatcatcacttcttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaaggcccacaggggccagactttatcttttgatccaaccacaatcatcacttcttt 440

                                                                       
Query: 240 ttt------------tttttttttttttt--------ggnttttctgggtagccctggct 279
           |||            |                     || ||||||||||||||||||||
Sbjct: 441 tttggggggggggggt-------------cgagacagggtttttctgggtagccctggct 487

                                                                       
Query: 280 gtcctggaactcactctgtagaccaggctggcctcaaactcagaaatccgcctgcctctg 339
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 488 gtcctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctctg 547

                                       
Query: 340 ccccccgagtgctgggattaaaggcgtg 367
           || |||||||||||||||||||||||||
Sbjct: 548 cctcccgagtgctgggattaaaggcgtg 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 780
Length adjustment: 9
Effective length of query: 370
Effective length of database: 771
Effective search space:   285270
Effective search space used:   285270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)